2025-04-23 20:12:55, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_064576973 9419 bp mRNA linear MAM 25-APR-2024 DEFINITION PREDICTED: Mirounga angustirostris ClpB family mitochondrial disaggregase (CLPB), transcript variant X5, mRNA. ACCESSION XM_064576973 VERSION XM_064576973.1 DBLINK BioProject: PRJNA1100993 KEYWORDS RefSeq. SOURCE Mirounga angustirostris (Northern elephant seal) ORGANISM Mirounga angustirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026991721) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029215605.1-RS_2024_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/19/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9419 /organism="Mirounga angustirostris" /mol_type="mRNA" /isolate="CCGP_5_RB_7025" /db_xref="taxon:9716" /chromosome="Unknown" /sex="female" /tissue_type="whole blood" /dev_stage="adult" /lat_lon="37.114554 N 122.329689 W" gene 1..9419 /gene="CLPB" /note="ClpB family mitochondrial disaggregase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 1 Protein" /db_xref="GeneID:123857475" CDS 77..2044 /gene="CLPB" /codon_start=1 /product="mitochondrial disaggregase isoform X5" /protein_id="XP_064433043.1" /db_xref="GeneID:123857475" /translation="
MLGFLVLRRTALAPRLLLHQLRSPSLRSHGSASSQSVTTAGRGEPQWLRAAVGGRPGTSLAFHPREGAATWGRQGGRTETQCLVAATWGRLPSPEETLPGQDSWNGVPKRAGLSMWALATALVVHCYSKSPSNKDAALMEAARTNNVQEVSRLLSEGADVNARHRLGWTALMVAAISRNDSVVQILLAAGADPNLGDDFSSVYKTAKEQGIHSLEGANPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQENAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRTRIAENLGDVQINDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAEKRLPKLRLEIIDKDSKTRKLDIRAPLHPEKVAEALLFCSSKETISGTWYDWSHHLS"
polyA_site 9419 /gene="CLPB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aacgcgccgcggcagccatgttggacgcggccagcgcaggggccggcaccagggggttatctaagcggctgtcacgatgctggggttcctggtgttgaggagaacagcgctggcgccgcggctcctcctccatcagcttaggtccccgtcgctccggagtcatggaagtgcctccagccagagtgtgaccaccgcgggccgcggggagccgcagtggctgagggcggccgtcggggggcgccctggaacatcgttggccttccacccccgagaaggggcagccacatgggggcgccagggaggacgcaccgagacccagtgcctcgtagccgcaacatggggacgccttcctagcccagaagaaacactcccgggacaggacagctggaacggggtccccaagagggccggactgagcatgtgggccctggccacggcgctagtggttcactgttacagcaagagcccgtccaacaaggatgcagccctgatggaagctgctcgcaccaacaatgtccaagaagtcagcaggctcttgtcggaaggtgcagatgttaatgcaaggcacagacttggctggacagcactcatggtggcagccatcagccgaaatgacagtgtggtgcagatcctgcttgctgctggtgctgacccaaaccttggggatgatttcagcagtgtttataagactgccaaggagcagggaatccattctttggaaggagccaaccccctgcagaggaatgaaatgggacacacacccttggattatgcccgagaaggggaggtgatgaagcttctgaggacttctgaggcaaagtaccaggagaagcaacggaagcgtgaggctgaggagcggcgccgctttcccctggagcagcggctaaaggagcacatcattggccaggagaatgccatcgccacagtgggtgctgcgatccggaggaaggagaatggctggtacgacgaagaacaccctctggtcttcctctttttgggatcatctggaataggaaagacagagctggccaagcagacagccaaatatatgcacaaagatgccaaaaagggcttcatcaggctggacatgtctgagttccaagagcggcatgaggtggccaagtttatcgggtccccaccaggctacattggacatgaggagggtggccagctgaccaagaagctgaagcagtgtcccaatgctgtggtgctcttcgacgaggtggacaaggcccatccagatgtgctcaccatcatgctgcagctgtttgatgagggccggctgacggatggaaaagggaagactatcgactgcaaggatgccatcttcatcatgacctccaatgtggccagtgacgagattgcacagcacgcgctgcagctcaggcaagaggctttggagatgagccgtacccgtatcgccgaaaaccttggggatgtccagattaatgacaagataaccatctcaaagaacttcaaggagaatgtgatacgccccatcctgaaagctcacttccggagagatgagtttctgggaagaatcaacgagattgtctacttcctccccttctgccactcagagctcatccaacttgtcaacaaggaactgaacttctgggccaagagagccaagcaaaggcacaacatcacactgctctgggaccgcgaggtggcagacgtgttggtcgacggttacaatgtgcactatggcgcccgctccatcaagcatgaggtcgagcgccgtgtcgtgaaccagctggcagccgcctatgaacaagacctgctgccggggggctgtactctgcgcatcactgtggaggactcagacaaacagctgctcaagagccccgaactgccctcaccccaggctgagaagcgtctacccaagctgcggctggagatcatcgacaaggacagcaagacccgcaaactggacatccgggccccactacaccctgagaaggtggcagaggctctgttgttttgctctagtaaagaaaccatatcaggaacatggtacgattggagtcatcacctgtcttaacctttcaataacccactgccattctccaagcaccatctgacttctgcacaagccagacaggtgagttaagagggtaagtaacagcaatcgccacctctgaattttcaggtctttgatgggtgtccgagtcttaacatttcccccagcaatgcagtattggcttttgtttataattttgataggaagtaagctgtggggcttccacttagccctttcaaccataatagccatatttcatgggttagagtgacatattctgccacttgctgaatatgcctaatctaactatccactatggaactagaaaaaccatgggtttaaaaatgggcttgggcgcctgggtggctcagttggttaagcgactgccttcggctcgggtcatgatcctggagtccctggatagagtcctgcatcgggctccctgctcggcggggagtctgcttctccctctgaccctcccccctctcatgtgctctctctctctcattctctctgtctcaaataaataaataaaatcttttaaaaaaaaaaataaataaataaataaataaataaataaataaataaataaataaataaaaataaaaatgggcttaaggacaggactggcagtgaggtagattagaatcaaaagtcagtttttcacttgactccataagcctccactctgagtgggggatcactgtgccaactacaactccaattagcattaagccagtgtcaatagttcccaagggcacagttattctcttagtttcctaggtctgccataacaagtaccacaactgggtgactaaaaaacagaaatgtattctttcatggttctggaagacagaagtccaaagtcaaggtgttggcagagttggttccttctggaggctctgagaatcttttccatgcctctctcctagcctctagtggttaccagtagtccttggcattccctggcttgcagtgtatcactccaatctctgcctccatcctcacttgatcttgctgtttgtctctatgtccaaatgtctttttataaggacatagtcattggattaggacccacactaatccagtatgaccttatcttagcttgattacatctgcaaagaacccatttccaagtaaggtcacttattacacaggtacctggggaaagggctccccgacatatctttttggaggacacaattcagccataacagttatcctgggacatgactataggtcccattggggaagcctattaggaatatatcaacagatatttatacatcttccttaagtgtacctaccttcacttcattcaaggaaccaacccaggcctggaaattgggtgagagaccataactcttatcttgtcttaagttggccttctgttcaccagttccaaaggattcttggttttatgaatcaggatcttagtgaaatgcccatattcttcagtcccatctgcagtgtcttcccctaacatccctggcctacagaaaccagttactatgcactttccaaagatgttgttactctctcacaaatatgtttctcagtggcttagtgaagagaacgtcatctggaccctctcaaggaatggcgttgattgtgaatgaatcacaccttcctagaaggaaaggtttataaaccaacattcgcatctccataagtgtttggattctttcggctacattataccaaagtattcttcatttaacaaaacatacatctactctatgacccaacaattccatttcaagagaaatgaaaacatatatccacaaaaaaaaaaaaaaagacttgcacataaatgttcatagcagcactattcatactagaacaaaactagaaatagcccatatgtccatcaaaagagaatggctaaacaaactgcatattaaattagttttacattacagtgtaaaaaataaccccaaacttagcagcttaaaacaacattctttgctgtgcagaagctttttatcttgatgaagtcccaaaagttcattttcccttttgtttcacttgcctttggagatgtatcttgaaagaagttgctgtggccgatgtcgaagaggttactgcctatgttctcctctaggattttgatggattcctgtctcacattgatgagtttatctttgtgtgggggtgttagagaatggtcgagtttcattcttctatatatagctgtccaattttcccagcaccatttattgaagagacttgtcttttttccattgcatattttttcctgctttgttgaagattatttgaccatagagttgagggtccatatctgggctctctattctgttccattggtctatacgtctgtttttgtgccagtaccaagctgtcttggtgatcacggctttgtaatatagcttgaaatcaggcagcatgaggcccatgcttttgtttttctttttcaacatttccttggcaattcggggtcttttctgattccatataaattttaggattgtttgttccagcactttgaaaaatatcattggcattttgatcaggatggtgttgaaggtatagattgctctgggcagcatagacattttaacaatgtttattcttccaatccatgagcatggaatgtttttccatctttttgtgccttcttcaatttctttcatgagtgttctgtagttcctagagtatagatcctttacctctttggttaggtttattccgaggtatcttatggtttttggtgttattgtaaatggaatcaattctctaatttctctttctacatttgcattgttagtgtataaggaagcaactgatttctgtgcattgattttgtatcctgccacattactgaattgctgtatgagttctagtaatttgggggtggagtcttttggattttccacatgaagtatcatgtcatctgcgaagagagagagtttgaacttttgggacttcatcaagataaaaagcttctgcacagcaa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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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