GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-04-23 20:12:55, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_064576973            9419 bp    mRNA    linear   MAM 25-APR-2024
DEFINITION  PREDICTED: Mirounga angustirostris ClpB family mitochondrial
            disaggregase (CLPB), transcript variant X5, mRNA.
ACCESSION   XM_064576973
VERSION     XM_064576973.1
DBLINK      BioProject: PRJNA1100993
KEYWORDS    RefSeq.
SOURCE      Mirounga angustirostris (Northern elephant seal)
  ORGANISM  Mirounga angustirostris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Phocidae; Mirounga.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026991721) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_029215605.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/19/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9419
                     /organism="Mirounga angustirostris"
                     /mol_type="mRNA"
                     /isolate="CCGP_5_RB_7025"
                     /db_xref="taxon:9716"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="whole blood"
                     /dev_stage="adult"
                     /lat_lon="37.114554 N 122.329689 W"
     gene            1..9419
                     /gene="CLPB"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 1 EST, 1 Protein"
                     /db_xref="GeneID:123857475"
     CDS             77..2044
                     /gene="CLPB"
                     /codon_start=1
                     /product="mitochondrial disaggregase isoform X5"
                     /protein_id="XP_064433043.1"
                     /db_xref="GeneID:123857475"
                     /translation="
MLGFLVLRRTALAPRLLLHQLRSPSLRSHGSASSQSVTTAGRGEPQWLRAAVGGRPGTSLAFHPREGAATWGRQGGRTETQCLVAATWGRLPSPEETLPGQDSWNGVPKRAGLSMWALATALVVHCYSKSPSNKDAALMEAARTNNVQEVSRLLSEGADVNARHRLGWTALMVAAISRNDSVVQILLAAGADPNLGDDFSSVYKTAKEQGIHSLEGANPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQENAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRTRIAENLGDVQINDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAEKRLPKLRLEIIDKDSKTRKLDIRAPLHPEKVAEALLFCSSKETISGTWYDWSHHLS"
     polyA_site      9419
                     /gene="CLPB"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
aacgcgccgcggcagccatgttggacgcggccagcgcaggggccggcaccagggggttatctaagcggctgtcacgatgctggggttcctggtgttgaggagaacagcgctggcgccgcggctcctcctccatcagcttaggtccccgtcgctccggagtcatggaagtgcctccagccagagtgtgaccaccgcgggccgcggggagccgcagtggctgagggcggccgtcggggggcgccctggaacatcgttggccttccacccccgagaaggggcagccacatgggggcgccagggaggacgcaccgagacccagtgcctcgtagccgcaacatggggacgccttcctagcccagaagaaacactcccgggacaggacagctggaacggggtccccaagagggccggactgagcatgtgggccctggccacggcgctagtggttcactgttacagcaagagcccgtccaacaaggatgcagccctgatggaagctgctcgcaccaacaatgtccaagaagtcagcaggctcttgtcggaaggtgcagatgttaatgcaaggcacagacttggctggacagcactcatggtggcagccatcagccgaaatgacagtgtggtgcagatcctgcttgctgctggtgctgacccaaaccttggggatgatttcagcagtgtttataagactgccaaggagcagggaatccattctttggaaggagccaaccccctgcagaggaatgaaatgggacacacacccttggattatgcccgagaaggggaggtgatgaagcttctgaggacttctgaggcaaagtaccaggagaagcaacggaagcgtgaggctgaggagcggcgccgctttcccctggagcagcggctaaaggagcacatcattggccaggagaatgccatcgccacagtgggtgctgcgatccggaggaaggagaatggctggtacgacgaagaacaccctctggtcttcctctttttgggatcatctggaataggaaagacagagctggccaagcagacagccaaatatatgcacaaagatgccaaaaagggcttcatcaggctggacatgtctgagttccaagagcggcatgaggtggccaagtttatcgggtccccaccaggctacattggacatgaggagggtggccagctgaccaagaagctgaagcagtgtcccaatgctgtggtgctcttcgacgaggtggacaaggcccatccagatgtgctcaccatcatgctgcagctgtttgatgagggccggctgacggatggaaaagggaagactatcgactgcaaggatgccatcttcatcatgacctccaatgtggccagtgacgagattgcacagcacgcgctgcagctcaggcaagaggctttggagatgagccgtacccgtatcgccgaaaaccttggggatgtccagattaatgacaagataaccatctcaaagaacttcaaggagaatgtgatacgccccatcctgaaagctcacttccggagagatgagtttctgggaagaatcaacgagattgtctacttcctccccttctgccactcagagctcatccaacttgtcaacaaggaactgaacttctgggccaagagagccaagcaaaggcacaacatcacactgctctgggaccgcgaggtggcagacgtgttggtcgacggttacaatgtgcactatggcgcccgctccatcaagcatgaggtcgagcgccgtgtcgtgaaccagctggcagccgcctatgaacaagacctgctgccggggggctgtactctgcgcatcactgtggaggactcagacaaacagctgctcaagagccccgaactgccctcaccccaggctgagaagcgtctacccaagctgcggctggagatcatcgacaaggacagcaagacccgcaaactggacatccgggccccactacaccctgagaaggtggcagaggctctgttgttttgctctagtaaagaaaccatatcaggaacatggtacgattggagtcatcacctgtcttaacctttcaataacccactgccattctccaagcaccatctgacttctgcacaagccagacaggtgagttaagagggtaagtaacagcaatcgccacctctgaattttcaggtctttgatgggtgtccgagtcttaacatttcccccagcaatgcagtattggcttttgtttataattttgataggaagtaagctgtggggcttccacttagccctttcaaccataatagccatatttcatgggttagagtgacatattctgccacttgctgaatatgcctaatctaactatccactatggaactagaaaaaccatgggtttaaaaatgggcttgggcgcctgggtggctcagttggttaagcgactgccttcggctcgggtcatgatcctggagtccctggatagagtcctgcatcgggctccctgctcggcggggagtctgcttctccctctgaccctcccccctctcatgtgctctctctctctcattctctctgtctcaaataaataaataaaatcttttaaaaaaaaaaataaataaataaataaataaataaataaataaataaataaataaataaaaataaaaatgggcttaaggacaggactggcagtgaggtagattagaatcaaaagtcagtttttcacttgactccataagcctccactctgagtgggggatcactgtgccaactacaactccaattagcattaagccagtgtcaatagttcccaagggcacagttattctcttagtttcctaggtctgccataacaagtaccacaactgggtgactaaaaaacagaaatgtattctttcatggttctggaagacagaagtccaaagtcaaggtgttggcagagttggttccttctggaggctctgagaatcttttccatgcctctctcctagcctctagtggttaccagtagtccttggcattccctggcttgcagtgtatcactccaatctctgcctccatcctcacttgatcttgctgtttgtctctatgtccaaatgtctttttataaggacatagtcattggattaggacccacactaatccagtatgaccttatcttagcttgattacatctgcaaagaacccatttccaagtaaggtcacttattacacaggtacctggggaaagggctccccgacatatctttttggaggacacaattcagccataacagttatcctgggacatgactataggtcccattggggaagcctattaggaatatatcaacagatatttatacatcttccttaagtgtacctaccttcacttcattcaaggaaccaacccaggcctggaaattgggtgagagaccataactcttatcttgtcttaagttggccttctgttcaccagttccaaaggattcttggttttatgaatcaggatcttagtgaaatgcccatattcttcagtcccatctgcagtgtcttcccctaacatccctggcctacagaaaccagttactatgcactttccaaagatgttgttactctctcacaaatatgtttctcagtggcttagtgaagagaacgtcatctggaccctctcaaggaatggcgttgattgtgaatgaatcacaccttcctagaaggaaaggtttataaaccaacattcgcatctccataagtgtttggattctttcggctacattataccaaagtattcttcatttaacaaaacatacatctactctatgacccaacaattccatttcaagagaaatgaaaacatatatccacaaaaaaaaaaaaaaagacttgcacataaatgttcatagcagcactattcatactagaacaaaactagaaatagcccatatgtccatcaaaagagaatggctaaacaaactgcatattaaattagttttacattacagtgtaaaaaataaccccaaacttagcagcttaaaacaacattctttgctgtgcagaagctttttatcttgatgaagtcccaaaagttcattttcccttttgtttcacttgcctttggagatgtatcttgaaagaagttgctgtggccgatgtcgaagaggttactgcctatgttctcctctaggattttgatggattcctgtctcacattgatgagtttatctttgtgtgggggtgttagagaatggtcgagtttcattcttctatatatagctgtccaattttcccagcaccatttattgaagagacttgtcttttttccattgcatattttttcctgctttgttgaagattatttgaccatagagttgagggtccatatctgggctctctattctgttccattggtctatacgtctgtttttgtgccagtaccaagctgtcttggtgatcacggctttgtaatatagcttgaaatcaggcagcatgaggcccatgcttttgtttttctttttcaacatttccttggcaattcggggtcttttctgattccatataaattttaggattgtttgttccagcactttgaaaaatatcattggcattttgatcaggatggtgttgaaggtatagattgctctgggcagcatagacattttaacaatgtttattcttccaatccatgagcatggaatgtttttccatctttttgtgccttcttcaatttctttcatgagtgttctgtagttcctagagtatagatcctttacctctttggttaggtttattccgaggtatcttatggtttttggtgttattgtaaatggaatcaattctctaatttctctttctacatttgcattgttagtgtataaggaagcaactgatttctgtgcattgattttgtatcctgccacattactgaattgctgtatgagttctagtaatttgggggtggagtcttttggattttccacatgaagtatcatgtcatctgcgaagagagagagtttgaacttttgggacttcatcaagataaaaagcttctgcacagcaaaggaaacagtcaacaaaacaaagaggcaacccacagaatgggagaagatatttgcaaatgacattacagacaaagggctgatatccaagatctataaagaacttctcaaactcaacacccaaaaaacaaataatcaagtcaaaaaatgggcagaagacatgaacagacacttctccaaggaagacatacaaatggctaacagacacatgaaaaagtgttcatcatcattagccatcagggaaattcaaatcaaaaccacattgagataccaccttacaccagttagaatggcaaaaattgacaaggcaagaaacaacaaatgttggaaaggttgtggagaaaggggaaccctcttacactgttggtgggaatgcaagttggtacagccactttggaaaacagtgtggaggttcctcaaaaaattaaaaacagagctaccctatgacccagcaattgcactactgggtatttatcccaaagacacagatgtagtgaaaagaagggccatatgcaccccaatattcatagcagcaatgtccacaatagccaaaccgtggaaagagccgagatgcccttcaacggacaaatggataaagaagatgtggtccatatatacaatggactattactcagccatcagaaaggatgaatacccaacttttacatcaacatggatgactggaggagattatgctaagtgaaataagtcaagcagagaaagtcaattatcatatggtttcacttatttgtggaacataaggaatagaggacattaggagaaggaagggaaaaatgaagggggggaatcggaggggaaaatgaaccatgagagactatggactctgagaaaccaactgagggttttagaggggaggggggtcaggggatgggttagcccagtgatgggtattaaggagggcatgtattgcatggagtactgggtgttatatgaaaacaatgaatcatggaacactacatcaaaaactaatgatgtactgtatggtgactaacataacataataaaattaaattaaagaaaaagaaaaagagacaaccacagtgataggaaaaaaaaaaacattccctcattagctcacaattctgtagctcacaattcactcattagctcacagttcagagtagggcacagttctcatctgctcaggatttcaggatgtcagccaggttgcatttccttttggaggctctgaggaaaaatccactccccagtttattcaattcgtagcagaattcaattccttgtagttgtaggactgaggtcctgtcttcttactggctgtcagctagaagtcactctcagctcctagaggtcacccacatttgccatgtggcccctccatttggctatgaagactcttcctcctgttgagtgatgtttcagatctctctgacttcactgttttctgacctcttaacccaaatataaagggttcaatgtcattaggtcagatccacccagataattcccctttttaacagtcaatagtgtcatatgatataacctaattatggaagtgatatctcatcatagtcatagtactgggaattacacagggcatgtacaccaagaggtaggaatttggggagacatcttagaattctgcttacacaagtatgttcattcgatgaattactattcagcaataaaaaaatgcagtgaactattgatacacacaacataggtgaatctcaaaaactttttgttgagtaaaagaaggcttacacaaagtactcaaaggaattaaagaacaggcaacattaatctctagtggaaaaagaatcagaagaatggttactccctgtgagggagtgggaattgggattaattgggaagaggcatgaaagaactttctgggatgatggtaaggggttgggttacataggcatgtgtgcgtgtcaaactcattgcgtggtgggtgcacttgagatttatgcgtttcactatatgaaaattatacctgaaaattaacaaataatatttttctctacttaatgatacacagaagtgttaggaaccaagtgtatggatgtctgtaacttactgtgaatgcatcaaaaaatacaatagatggagagatggatagaagaatggatagctgggtagatataagctaaagtgaatatactaaaatgttattatagactctagggaaaaataacctcatcttaaaaaaaaaaaaaggcaactagaactcccagttatggggcacctgggtggctcagttggttaagcgtctgcctttggctcaggtcatgatcccagggtccggggatcgagccccgcattgggccctgctcagagaggagtttgattctccctctccctttgcccctaccccccgctcatgctctctctgtgtctcaaataaataaaatcttaaaaaaaaaaaaaactcgggacgcctgggtggctcagttggttaagcgactgccttcggctcaggtcatgatcctggagtcccgggatcgagtcccgcatcgggctctctgctcagcagggagtctgcttctccctctgaccctcccctatctcattctctctctcaaataaataaataaaaagaaaaaaaaatcttaaaaaaaaaaaaaaccaaacaaaactcccagttattagaactaactcatggaatccaggctctggtatgtgcactcatattgatctattcagcctaattttaaattatgttcctccttcctggtccagcacctcaaaatccattctcagatttgccagattttattgatataaatttgaaaaatcttttaattcttatagtgggaaggccttcttgtgaatttgacttcctatttgaccatgaggcatgttggggtctgattctggctgtgagtatggagataatgaagtcagtgggatggggcataaggaaacttggtttcctcttaccagataattcccatggggacatttttacatggtcttcaaacaagagaaaagttatcccattagacagggaggaggtcctatagtagctggctacttccattgggaggttgggattgtgacagagatcattagttgcctgctgtgatagatggcttctgacatggctctcagtgatccttgtcttctgattttcatgtccttgtataatcccctctccttgagtgtgggcaggacctagtaaccttcttctaaggaatagaatatggcaaaagtgatatgatgtcatttccaaggttagtttatgaaagactgacttctgtcttgctggcattttgtctggctcttcttatgtgctttccctgttggagaggtccatatggcaaggaactgagggcaatctctggccaaaatctggtaaggactgaccccttcggtccaacatgcctggataaactgagtcctggtaacaaccatgtgagtgagcttggaagcaatctttccttggtcaagctttcatttgagactaaagatttggcaccttgactgcaaccttatgagaggccctgaagcagaatactcaggtaagtcacatccagattcttgatccacagaaattatgagataataaatgtgtgttgttttaagctaataagtttgggggtagtttgttatgtagcagtgggtaacaatacacctgcctaatatccattctctcctcagcagcatagactctactgggggtagggggatactaatgtgctcagttaaaatcttgcctttcctagtctcccattaagtttgatgtaactgtatgactaagctcaggcaaagaagtaagtggaagtgttgaatggaacttctagaaggttccttattaaggagatgtctcactgaaagatgcactttttcttttcctttttcctcattcttgctgcctagaatatggatgtgatagctggatctccagcagctacctaagacataagaacctaagttagaaaccacactctaggaaacaaaaaaaaagaaggaatctgagtcctaagtgcccatggagcagccacacaagcactggactccttacttatagacttaccttaagtgaagaagaagtaatctattatttgcttaccttgttgttattttggattttcccttatgtgctcccaacctagccctaacgcatagagggcttaggcctctcttagccatccaaatcctttcatcaccattcccatcctggcatgtccctctttcaaaccattctctaactctcacacaggagcaaagttgagtttgatttttaccctctcattctctctctaagctttccacacctcctcaccatccttgaattcctcattccctttatactgatccctgacagtccaccaagtctatgctctttagggatacttaattccaggtggccactggtaataaattgatgaactgtttgccattaaataacactccatctctggatttttact
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]