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2025-04-23 20:26:55, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_064492668            1790 bp    mRNA    linear   MAM 12-APR-2024
DEFINITION  PREDICTED: Camelus dromedarius ClpB family mitochondrial
            disaggregase (CLPB), transcript variant X2, mRNA.
ACCESSION   XM_064492668
VERSION     XM_064492668.1
DBLINK      BioProject: PRJNA1097981
KEYWORDS    RefSeq.
SOURCE      Camelus dromedarius (Arabian camel)
  ORGANISM  Camelus dromedarius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda;
            Camelidae; Camelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_087447) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036321535.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/10/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Camelus dromedarius"
                     /mol_type="mRNA"
                     /isolate="mCamDro1"
                     /db_xref="taxon:9838"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Qatar: Mr. Shabat bin Saqar Al-Muraikhi
                     camel breeding farm"
                     /lat_lon="25.27881495 N 51.50256842 E"
                     /collection_date="2022-02-17"
                     /collected_by="Rasheed Hashim, Farooq Omar Al-Ajli"
     gene            1..1790
                     /gene="CLPB"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 3 Proteins"
                     /db_xref="GeneID:105096753"
     CDS             105..1724
                     /gene="CLPB"
                     /codon_start=1
                     /product="mitochondrial disaggregase isoform X2"
                     /protein_id="XP_064348738.1"
                     /db_xref="GeneID:105096753"
                     /translation="
MEAARTNNVQEVSRLLSEGADVNARHRLGWTALMVAAINRNDSIVRVLLAAGADPNLGDDFTSVYKTAKEQGIHSLEVLVTREDDFNNRLNNRASFKGCTALHYAVLADDYRTVKELLDGGASPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSHNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAEKRPPKLRLEIIDKDSKTHKLDIQAPLHPEKVCHTL"
     polyA_site      1790
                     /gene="CLPB"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gttgggttccagaacgtctgcaccaatctgttctcaactggcaatgtgaatagtgttttcctcagaagaatggtctccaactctactctggagatgcagccctgatggaagctgctcgcaccaacaatgtccaagaagtcagcagactgttgtcagaaggtgcagatgtcaacgcaaggcacagactcggctggacagcactcatggtggcagccatcaaccgaaacgacagtatagtgcgggtcctgcttgctgctggtgctgacccaaaccttggggatgatttcaccagtgtttacaagaccgccaaggaacagggaatccattctttagaagtcctggtcaccagggaggatgacttcaacaaccggctgaacaaccgagccagcttcaagggctgcacagccctgcactatgctgtccttgccgatgactaccgcaccgtcaaggagctgcttgatggaggagccagtcccctgcagaggaatgaaatgggacacacacctttggattatgctcgagaaggggaggtgatgaagcttttaagaacttctgaggccaagtaccaggagaagcagcggaagcgcgaggccgaggagcggcgccgctttcctctggagcagcggctaaaggagcacatcattggccaggagagtgccatcgccacggtgggtgctgcgatccggaggaaggagaatggctggtacgatgaagaacaccctctggtcttcctcttcttgggatcatctggaataggaaaaactgaactggccaagcagacagccaaatatatgcacaaagatgccaaaaagggtttcatcaggctagacatgtctgagttccaggagcggcatgaggtggccaagtttatcgggtccccaccaggctacatcggccacgaggagggtggccagctgacgaaaaagctgaagcagtgccccaacgccgtggtgctcttcgatgaggtggacaaggcccatccagatgtgctcaccatcatgttgcagctgtttgatgagggccggctaacagatggaaaagggaagaccatcgactgcaaggacgccatcttcatcatgacctccaacgtggccagcgacgagattgcacagcatgcgctccagctgaggcaggaggctttggagatgagtcataaccggatagctgagaaccttggggatgtccagattagtgacaagatcaccatctcaaagaacttcaaggagaatgtgattcgccccatcctgaaagctcacttccgaagggatgagtttctgggacggatcaatgaaatcgtctacttcctccccttctgccactcagagctcatccaactcgtcaacaaggaactgaacttctgggccaagagagccaagcaaaggcacaacatcacactactctgggaccgcgaggtggcggatgtgttggtcgacggctacaacgtgcactatggcgcccgctccatcaagcatgaggtggagcgccgtgtagtgaaccagctggcagctgcctatgagcaggacttgctgccagggggctgcacgctacgcatcactgtcgaggactcagacaagcagctactcaagagccctgaactgccctcaccccaggccgagaagcggccacccaagctgcggctggagatcatcgataaggacagcaagacccacaaactggacatacaggcaccactacaccctgagaaggtgtgccacaccctctagcatctgcctacctgcctatatgtgccctcaacacccaataaaagcccctcggctgtagcatggtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]