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2025-04-23 19:58:56, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_063492733            3476 bp    mRNA    linear   VRT 22-MAY-2024
DEFINITION  PREDICTED: Pelmatolapia mariae ClpB family mitochondrial
            disaggregase (clpb), mRNA.
ACCESSION   XM_063492733
VERSION     XM_063492733.1
DBLINK      BioProject: PRJNA1078875
KEYWORDS    RefSeq.
SOURCE      Pelmatolapia mariae (spotted tilapia)
  ORGANISM  Pelmatolapia mariae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Pelmatolapiini;
            Pelmatolapia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086239) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036321145.2-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/17/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3476
                     /organism="Pelmatolapia mariae"
                     /mol_type="mRNA"
                     /isolate="MD_Pm_ZW"
                     /db_xref="taxon:158779"
                     /sex="female"
                     /tissue_type="heart"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Maryland"
                     /collection_date="2023-03-23"
                     /linkage_group="LG14"
     gene            1..3476
                     /gene="clpb"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins"
                     /db_xref="GeneID:134640795"
     CDS             198..2219
                     /gene="clpb"
                     /codon_start=1
                     /product="mitochondrial disaggregase"
                     /protein_id="XP_063348803.1"
                     /db_xref="GeneID:134640795"
                     /translation="
MLSSVPTRLFARRSRSLSPCSRVLQTSASGGACQGIRETPAEAKRNPIVSTSRVSRRGILAEETAGNSLKPSMQYHHLAPRWLSNLENRRSSWAALASRGRNNNQYWEESGGDRGTGGGPMRAGVASAGVLSAAAVAFCLKKDPDNKDDALLEAARTNNAQDVARLLKEGVDPNHRHRLGWTALMVAAMNRQYSVVKVLLEAGADPNAGDHFNNVYDTSREKGIHSLEVLVSREDEFSSRLSSRAGFRGCTALHYATLADDPRAVRMLLEAGANPLQTNGVGHTARAYAKEGEVSTLLQEWEGKFLELQARREAEERRRFPLERRLKEHIIGQEGAINTVASAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQVARYMHKDIKKGFIRMDMSEFQEKHEVAKFIGSPPGYVGHEEGGQLTKLLRACPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIECKDAIFIMTSNVASDEIAQHALQLRQEAEQVSRRKLADNLEDVQKSDDIKISRQFKESVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELLQLVSKELNFWAKKAKQRHDITLQWDRPVLDLLAGGYNMHYGARSIKHEVERRVVNQLAAAYEQELLPKGCTLRLSVQSEGQKEYGTPSLRLEVVGEDSSSRTLDIRPPLSPEH"
ORIGIN      
cggcttctagtgacatccacgctacgacgagctgaagcggttatttacgttccgatgttacgaacggtcccctgacctgagctctaaccactgttacacctgagtgaaggcgctgcccctagtttgttgttctccggagtcactcccagactgacgccataagccagaccagcttggttttcggtgagtctattgctatgctatcatcggttcccaccaggctatttgcgcgaaggtcgcgcagcctgtcaccgtgcagtcgtgtgcttcagaccagcgccagcggtggcgcgtgccagggcatccgcgagactccggcggaggccaagcgcaaccccatcgtgtccacttccagggtctccaggagggggattttggctgaggagactgctggaaacagcttgaaaccatcgatgcagtaccaccacctcgcccctagatggctgtccaacctggagaatcgccgcagttcctgggcggctctggccagcagaggtcgtaacaacaaccagtactgggaggaaagcggcggggacaggggaacaggtggaggacccatgcgggcaggagtagcctcagccggtgtcctctctgctgcggctgtggccttctgtctgaagaaagaccccgataacaaagatgatgctcttttggaagcagcaaggaccaataatgctcaggatgtagccaggctgttaaaagagggggtggatccgaatcatcgccaccgtctcggctggaccgctctcatggtggccgctatgaatcgacagtacagcgtggtgaaagtcttacttgaagctggtgccgacccaaatgccggtgatcacttcaacaatgtttacgacacatcacgggagaaagggatccactcactggaagtcttggtgtccagagaggacgagttcagcagcaggctgagcagcagggctggtttccgtggctgcacagcgcttcactatgctacgctggcagatgacccacgcgctgtacgcatgctgcttgaggctggtgccaaccccctgcagaccaatggtgtgggacacacagcacgggcctatgctaaggagggagaagtgagcactttgctgcaggagtgggagggcaagtttctggagttacaggctcggcgagaggcagaggaaaggaggaggttccccctggagaggaggctgaaggagcacatcattggacaggagggggccatcaatacggtggcttcagccatcaggagaaaggagaacggctggtacgatgaagaacatcccctcgtattcctcttcctgggctcatcgggaatcggaaagacggagttggctaaacaggtggctcgttacatgcacaaggacattaaaaagggtttcatccgcatggacatgtcggagtttcaggaaaagcacgaggtggcaaagttcattggctctccaccgggatatgtgggacatgaagaaggcggtcagctgaccaagctgttgagggcgtgtcctaacgctgttgtcttgtttgatgaagtggataaggcccaccccgatgtcctcaccatcatgctgcagctctttgatgagggtcgtcttacagacggtaaaggaaagacaatcgaatgcaaagacgccatcttcatcatgacgtcgaacgtcgcaagtgacgagatagcccagcatgcattgcagctccgccaggaagccgagcaggtcagccgcaggaagctggccgataacctcgaggacgtacagaaaagtgatgacattaaaatctccagacagtttaaagaatctgtgattcggccaatcctgaaggctcatttccggagggacgagttcctgggccgtatcaatgaaatcgtctacttcctgccattctgtcactcagagctgctacagctggtcagcaaagagctcaacttctgggccaaaaaggctaaacagcggcatgatatcactcttcagtgggatcgtccagtactggacctgttagcaggcggctacaacatgcattatggagctcgttccatcaagcatgaggttgagaggagagtcgtcaaccagttagccgcagcgtacgagcaggagctgctgcccaaaggctgcacgctgcgtctgtctgtccaatcagaaggccagaaagagtacggcacgcccagcctgcgcctcgaagtggttggagaggacagctcatcgagaacgctggacatccgtccaccactcagccctgaacactaacaacaaaggattaaaaatgcgagcatacactgaacaaaagaacatgttggatttacttcattcagtagtggacattagatgcacacagatgttttgctatggcagcaacttaaacagagttaaattaacactagttattcgtattcaataaacctgtgcaatgtgtgttgatcaaatgtgattgaaacgttgaaatgttttgatgaagtaatttgagctcttggaatactttaatccttcacaattttctcactttattcaaacactattcaataactttaaccaaatactacatgttagtattatattctagtatgaaatacacaattttccaatggaggccttataacagattgtattgttctcttccaagttgccagtatccactagtaacctttcaaaacaaaatgtctaatatcactgcaggtaaagcaggggtctcaaactcgtggcccggggaccacttgcggcccacatcacccttacttgcagcccgtatattgacatgaagaaatataatgcaatttggtccttgaagttacttttgttagggaggatttgtttgttgttgagtgcaatgttaaaataagttctttaaaagcaaaaacgtacttaatatgaaggcaatatgagcagagagcacaaacatgtttaccgattgactgttagttcagtgagagagttatttgcaaagaaaacaattttcactggcagtcaaaaactaatgtgtacacttatgtctgcatttttattttgtttgtatttaacaaaataatagcagaagtgctgccacgggtctggccagaaagagagtaccaatttgtttatttggtagttcaatgaaaggcttcagttaagagtgagaaggaaaaaaaaaattgcgttcacatttgcacttttgtttatacaatatttgaaatttaaaaacacaaaacaaaacactgcattttcagaattatttgtggggggttttatactacttgaacactaatgtggccctccaatgagatgacagtgcccacagctcatttaagtttgagacccctgaggtaaagaattgaactgacattactcctctactgaaatacgtcagcttttcagtgttttgttgaatcagtcatggcataggaattaggccttttcatttgaaaaatgttacaagtaaccatcttggaagagaacaatacaaaaaattctgcttaaggcctctgatgtcaagattcagtttgacaacaattataactaaacaatttgacg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]