2024-11-15 18:49:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_055060962 1677 bp mRNA linear VRT 09-APR-2023 DEFINITION PREDICTED: Poeciliopsis prolifica uncharacterized LOC129379996 (LOC129379996), mRNA. ACCESSION XM_055060962 VERSION XM_055060962.1 DBLINK BioProject: PRJNA952241 KEYWORDS RefSeq; includes ab initio. SOURCE Poeciliopsis prolifica (blackstripe livebearer) ORGANISM Poeciliopsis prolifica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026562438) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_027474105.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/07/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1677 /organism="Poeciliopsis prolifica" /mol_type="mRNA" /strain="line A6" /db_xref="taxon:188132" /chromosome="Unknown" /sex="male" /tissue_type="whole body" /dev_stage="adult" /collection_date="2018-02" gene 1..1677 /gene="LOC129379996" /note="uncharacterized LOC129379996; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:129379996" CDS 1..948 /gene="LOC129379996" /codon_start=1 /product="uncharacterized protein LOC129379996" /protein_id="XP_054916937.1" /db_xref="GeneID:129379996" /translation="
MIQKKVSKDKNDLNKEEDHLKNLTTELSKEENELKRKTMEWNKEKNELNKKKEQLSKNTMELNEEEEKLNKRKDELKNLKAELSQEKNVLRKKTIKEIEELNKIKDDLSKKRAELRKTTDELSKEKDELSKEKRELSKVKDKLNKEKDDLHKEKETLNKEKETLSKEKKELSKENDELNTNRDKLSKEKKELNIKKDELSNKRKEVDKEKDELNKKKGDQDKVKAELSRKTEELNNEEKDLNKKQLELNKEKEELGKEKVHLSKEKTKLDKEKQELNKKKVDLNKETAGLNKEKQEFSKNKADVNKKKEELTKRL"
misc_feature <7..945 /gene="LOC129379996" /note="helix-rich Mycoplasma protein; Region: Mplasa_alph_rch; TIGR04523" /db_xref="CDD:275316" polyA_site 1677 /gene="LOC129379996" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgatacaaaagaaggtgagcaaagataaaaatgacctgaataaagaggaggaccatctaaagaatttaacaacagagctgagcaaagaggaaaatgagctgaagagaaagacaatggagtggaacaaagagaagaatgagctgaacaaaaagaaagaacagctaagcaaaaacacaatggagctgaacgaagaagaagagaagctgaacaaaaggaaagatgagctgaaaaacttgaaagcagaactgagccaagaaaaaaatgtgctgagaaagaaaacgatcaaagagatcgaggagctgaacaaaatcaaagatgatctgagcaaaaagagagcagagctgagaaaaacaacagatgagctgagcaaagagaaagacgaactgagtaaagagaaaagggagctgagcaaagtgaaagacaaactgaacaaagagaaagatgatctgcacaaagagaaagagacactgaacaaagagaaagagacactgagcaaagaaaaaaaggagctgagcaaagaaaatgatgaactgaacacaaaccgagacaagctaagcaaagaaaaaaaggagctgaacataaaaaaagatgaactgagcaataagagaaaggaggtggacaaagaaaaagatgaactgaataaaaagaaaggcgaccaggacaaagtaaaagcagagctgagcaggaagacagaagagttgaacaacgaggaaaaggatctgaataaaaaacaattggagctaaacaaagagaaagaagagctgggcaaagagaaagtgcatctgagcaaagagaaaacgaagctggacaaagagaaacaggagctgaacaaaaagaaagtcgatctgaacaaagagacagcgggtctgaacaaggagaaacaggagtttagtaaaaacaaagcggatgtgaacaaaaagaaagaggagctaacaaagagactgtgaatctgagcaacaaggcggagcagctgaacaaagagacgaaggagctgaatgaaaagaaagcggaactgaacaaactgaaagcggatctgaataaagagaaagtggagctaaatgaaaagaaagtggagctgaataaagagaaagaaaagctgagcgcaataaagaaggagtcggacaatcaatgcaaagagagagatgccctgaagaccttctacgacaacgtcatgaaatttgaacgatttccagtttcagagctgtgtcctctagatatgagaccaaaatgtctggattgcagggtcggatggctttccttcaggggacactgctactggttttcagatagaggtcattctttgaatttctggaacgtgtctcgagacttgtgtcagcatgatagtggatatttggctataattgatgatctggaggagcagaaatttatcgtcaagcatgccaaaccctacgaatctcaacaccaaggatactggatagggttacatcataaactcgccggatggttctgggttgatggacgtaagaacgctcttgacttctggacaaaagaggtcccccattcttcgggagcagctctgcatatgccacaaagaaaagccaaagagagctggagagcagaagacaaggcagtgaagcacagattcatctgtgagcatcctatgactgtttggccctacaactaacactgttctgttaaagcttcagcgaggaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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