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2024-11-15 18:49:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_055060962            1677 bp    mRNA    linear   VRT 09-APR-2023
DEFINITION  PREDICTED: Poeciliopsis prolifica uncharacterized LOC129379996
            (LOC129379996), mRNA.
ACCESSION   XM_055060962
VERSION     XM_055060962.1
DBLINK      BioProject: PRJNA952241
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Poeciliopsis prolifica (blackstripe livebearer)
  ORGANISM  Poeciliopsis prolifica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Poeciliopsis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026562438) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_027474105.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/07/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Poeciliopsis prolifica"
                     /mol_type="mRNA"
                     /strain="line A6"
                     /db_xref="taxon:188132"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="whole body"
                     /dev_stage="adult"
                     /collection_date="2018-02"
     gene            1..1677
                     /gene="LOC129379996"
                     /note="uncharacterized LOC129379996; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:129379996"
     CDS             1..948
                     /gene="LOC129379996"
                     /codon_start=1
                     /product="uncharacterized protein LOC129379996"
                     /protein_id="XP_054916937.1"
                     /db_xref="GeneID:129379996"
                     /translation="
MIQKKVSKDKNDLNKEEDHLKNLTTELSKEENELKRKTMEWNKEKNELNKKKEQLSKNTMELNEEEEKLNKRKDELKNLKAELSQEKNVLRKKTIKEIEELNKIKDDLSKKRAELRKTTDELSKEKDELSKEKRELSKVKDKLNKEKDDLHKEKETLNKEKETLSKEKKELSKENDELNTNRDKLSKEKKELNIKKDELSNKRKEVDKEKDELNKKKGDQDKVKAELSRKTEELNNEEKDLNKKQLELNKEKEELGKEKVHLSKEKTKLDKEKQELNKKKVDLNKETAGLNKEKQEFSKNKADVNKKKEELTKRL"
     misc_feature    <7..945
                     /gene="LOC129379996"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
     polyA_site      1677
                     /gene="LOC129379996"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atgatacaaaagaaggtgagcaaagataaaaatgacctgaataaagaggaggaccatctaaagaatttaacaacagagctgagcaaagaggaaaatgagctgaagagaaagacaatggagtggaacaaagagaagaatgagctgaacaaaaagaaagaacagctaagcaaaaacacaatggagctgaacgaagaagaagagaagctgaacaaaaggaaagatgagctgaaaaacttgaaagcagaactgagccaagaaaaaaatgtgctgagaaagaaaacgatcaaagagatcgaggagctgaacaaaatcaaagatgatctgagcaaaaagagagcagagctgagaaaaacaacagatgagctgagcaaagagaaagacgaactgagtaaagagaaaagggagctgagcaaagtgaaagacaaactgaacaaagagaaagatgatctgcacaaagagaaagagacactgaacaaagagaaagagacactgagcaaagaaaaaaaggagctgagcaaagaaaatgatgaactgaacacaaaccgagacaagctaagcaaagaaaaaaaggagctgaacataaaaaaagatgaactgagcaataagagaaaggaggtggacaaagaaaaagatgaactgaataaaaagaaaggcgaccaggacaaagtaaaagcagagctgagcaggaagacagaagagttgaacaacgaggaaaaggatctgaataaaaaacaattggagctaaacaaagagaaagaagagctgggcaaagagaaagtgcatctgagcaaagagaaaacgaagctggacaaagagaaacaggagctgaacaaaaagaaagtcgatctgaacaaagagacagcgggtctgaacaaggagaaacaggagtttagtaaaaacaaagcggatgtgaacaaaaagaaagaggagctaacaaagagactgtgaatctgagcaacaaggcggagcagctgaacaaagagacgaaggagctgaatgaaaagaaagcggaactgaacaaactgaaagcggatctgaataaagagaaagtggagctaaatgaaaagaaagtggagctgaataaagagaaagaaaagctgagcgcaataaagaaggagtcggacaatcaatgcaaagagagagatgccctgaagaccttctacgacaacgtcatgaaatttgaacgatttccagtttcagagctgtgtcctctagatatgagaccaaaatgtctggattgcagggtcggatggctttccttcaggggacactgctactggttttcagatagaggtcattctttgaatttctggaacgtgtctcgagacttgtgtcagcatgatagtggatatttggctataattgatgatctggaggagcagaaatttatcgtcaagcatgccaaaccctacgaatctcaacaccaaggatactggatagggttacatcataaactcgccggatggttctgggttgatggacgtaagaacgctcttgacttctggacaaaagaggtcccccattcttcgggagcagctctgcatatgccacaaagaaaagccaaagagagctggagagcagaagacaaggcagtgaagcacagattcatctgtgagcatcctatgactgtttggccctacaactaacactgttctgttaaagcttcagcgaggaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]