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2025-04-20 14:18:34, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_054372067            5242 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens microsomal glutathione S-transferase 1
            (MGST1), transcript variant X6, mRNA.
ACCESSION   XM_054372067
VERSION     XM_054372067.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060936) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5242
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="12"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..5242
                     /gene="MGST1"
                     /gene_synonym="GST12; MGST; MGST-I; PMAN"
                     /note="microsomal glutathione S-transferase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 long SRA reads, 1 Protein, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:4257"
                     /db_xref="HGNC:HGNC:7061"
                     /db_xref="MIM:138330"
     CDS             93..467
                     /gene="MGST1"
                     /gene_synonym="GST12; MGST; MGST-I; PMAN"
                     /codon_start=1
                     /product="microsomal glutathione S-transferase 1 isoform
                     X3"
                     /protein_id="XP_054228042.1"
                     /db_xref="GeneID:4257"
                     /db_xref="HGNC:HGNC:7061"
                     /db_xref="MIM:138330"
                     /translation="
MVDLTQVMDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVERVRRAQEILGPERQIQKNLHVNETGVEMRMAGNAWKQTCNCLMAWSSKSQSRLA"
     misc_feature    138..>320
                     /gene="MGST1"
                     /gene_synonym="GST12; MGST; MGST-I; PMAN"
                     /note="MAPEG family; Region: MAPEG; cl45926"
                     /db_xref="CDD:480267"
     polyA_site      5242
                     /gene="MGST1"
                     /gene_synonym="GST12; MGST; MGST-I; PMAN"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
attctggaccctgaacaggaggggacatcgtgacaaagcaaattgtctggtatcatgaatttggaacaccattccagaccaaaattgaaaaaatggttgacctcacccaggtaatggatgatgaagtattcatggcttttgcatcctatgcaacaattattctttcaaaaatgatgcttatgagtactgcaactgcattctatagattgacaagaaaggtttttgccaatccagaagactgtgtagcatttggcaaaggagaaaatgccaagaagtatcttcgaacagatgacagagtagaacgtgtacgcagggcacaggagatcttaggcccagaaaggcagattcagaagaacctacatgtaaatgagactggagtggaaatgagaatggcaggaaatgcatggaaacagacttgtaactgtctcatggcctggtcgtccaaatcccagagtaggttagcctgactgtgctatcacagcataggagcaagacaggaaatggaactgcataaatctcctttcaagagtctgcaatcattacatccaccaacatgcccttggccagagaaagtcacagggctggcctcagaactaaagtgctgagaaatggactcaaccccctcagggagatgaaccgcaaagtcacatggcacaggggcatggatgcacagagggatgaagatttaggccacttatacagtcaatctattgcacttgtccgctttgttatgctagtatgagtttcaattcagacacatgtaaaagcattttataaactttatgacattatgcaattaaaacagcatttattctaatgtgtcataattttatcagattagtggtaatctgtgatatgctcagtatgagagcaatagttacaaactaagtaaaaaacacaatacagggtttgtgaacttggccttctccctctcatttgcaatgtgctgccttaggaagacagatgggacaaggaacaaatatttggacagccttatcgcctctataactaagttggttcccaaactgtgcccagtctgttctcttgaaattataatatgcaccctgctcccaaccaagtgtttcatcaaatttaatcagtttctgattattcacatattaaatgtagaccagagaatattgctggcccaaatgtaaaatttttgtgttagtgtttgctgaaataattgtatattatcttctatgggttgtatattaatcatgaaaataaagctgtgctaagttcttgtttgagctacccaatttataacttgatagtgaaaggaatataatttcctttgtaactcatctttcatgacaatacagttagaggctggatcctagaattgattctaataatagttttgccactgatacacatgagaaacccaggcaagtcacctacttatgctctattcatttcttcacatttaaaatgaatacattgaactagaacaatttttgaaatattctgtgactctaaaaattctatttactctggaggcaggtgttggtctactctttctccagtgataaaatatgaatatcaagatgtggaaataattatagcagaaagcttatagcctttattaatgaggtcaagctcaatttgagttaaatagcattttgtgggtttaatgtctcagaataataatctttaattttctctgaatcgccaatgtgatgtcaccaaaatgaaatgattgttacttttccgaaaaattcaataaatgcattgaattacctccatttaataattttcttctattaattcttcttcagacattgaacatactatcacttgaatagaccagtaacttgtgctagtagttgatggtgggacaaatagaatgcttggaagtaaatgaaacagggttccttggtctaatcattattctgggttcccagaatcttgactctatgaattagttaggttctacctagtccaaatgtgtacagataaaataaaagaaaaatgtttattcatttcttcataaagaaatatttattgaaggactcatatgtgcccagcactattctagatgcttggtatacaacaaggaccacagaaaaagtttgcattccaaaggaaattctttaacttagggcttgtaaagaaagaaagatggtgaaacgactgaactcatattataccagaagtcagtcaactatggtctgtgggccaaatctgacctgccacctctttttgtatggcccacaagctaacaatgatcaatggtttttactaatgaacatttgcaatcaatttgatgactagaaacactaaccttgaactccaattaagcaaaatgttaatcccctgaataaaaattccattcttctcattagtagatctttgttacaaaaaaaggtacttcatcattattgttatcttttgaagatcatcagctaaaaaatatggaaatttgttttccttcctgttttataagtacctatgtaacatacttgattttgcctcttagctcacaaagtctaaaatatttactctggcataaaaacagacacatagatcaatgggacagaatagagaacccagaaataaatccatgaatttagtcaactcatttttaacaaaggtaccaagaacatgcattagggaaagaacagtctcttcaataaatgctactgggaaaattggatctccacgtgcagaaaaaggaaactagacctctatctcttgccatatacaaaaatcaaaccaaaatggattaaaagcttaaatctaagacctgagactatgaaattataagaagaaaacattaaggaaacactccaggattttggtctggcaaagatttcttgactaaagcctcaaaaacacaggcgaccaaagcagaaatggacaaatggtatcacatcaagttaaaaagcttctccacagccgaggaaacaatcagcaaagagacaacctacaaaatgggagagaaaatatttgcaaatatccatatgataagagattaataacaagaacatataagaagctcaaataactcaatagccaaaagtcaagtaatccacttaaaaatgggtaaaagatctgaatagacgttctcaaaagaatacatacaaatggccaactagtatatgaaaaaacacacaacagcactaatcatcaggaaaatacaaatcaaaaccacaatgtggtatcatctcactccagttaaaatggcttttacccaagacagagaataacagattctagtgagaatgtggcaagaggggagccctcttacactgttggtggggatgtaaattagtgcagccacttgtggaaaacagtatgaagatttctcaaagaattaaaaatagaattaccatatgattcagcaatctcactgctgggtgtatattcgaaagaacggaaatcagtatattaaagagatatctgtactctcacgtgtattacagcactattaccaatagccaagatcagcctaagtgcccatcaacaggtggatggataaagaagatgggatgtgtgtgtgtataatataatattccattatatattatatgttacatatattatgtattagattatatattacatattatgtagtatattatatattacatattttatatattttatattgtatattttatattatatattacatattacatattatatattacatattatataatatagtatatattatatactatattatcatatactatacatactatgtgttacataatggaatattatacaaaacaaaatattatttggccataaaaaaaattctgtcatttgaaacaacatggatagaactggaggcttttatgttagtgaaataatccaagcacagaaagacaaatatctcatgttctcactcatatgtgggagcttaaaaagataacctcacggagatagggagtaaaatggtggttactagagaggttgggaaggatagtagggatgtgggggataaagaggggttgaggaatgagtttgagaatatggttggatggaaggaatcgatctagtgtttggcagcacaataaggtgactatagttaataataatttattgtatatttcaaaataactagaagaatgcaattggagtgttcctaacacaaagaaatgataaatacttgaggtgatgaataccccaattaacttgattagattataatatgattgtatcaagatattatatgtatcccgtgtgataactgttatgtatccgtatccataagaataaaaataaataaaaatttttaaaaagaaaaataaaataaagtatttactctggccttttacaaagtttgtcaactcctgatctatacaattgaataaaaagcatataaatggatactgaaatttctctcattatttttcactgactaactggtgccagaatttaatcaaagtgactaagaacaccactttatttcaacattggtcctcttatatttgccccaaattatccatttttgtttcaaattattacaattattacattctatatggcttggtatatatgggatactcagtaatttttcaagaattttctcagttgttaaaggattgaaatattgttaattgtcttctatgaaaacatagcttcttatcagcatgttttgagcttgtatgtgctttccctagtagctgaatttttttccatgagatcagttctcttgacattactgtgatggaaattgaggttttaaagtccctttggttggaaaagtgtatttttgtttggagtagatatgcagaaatcatgatacatccagtgtaacaccattaaatcactcacttctcagaaacggtagctaaaaccattaatgtttaatcacttcatagccaatgccaagtagtttacattaacagggagcagaatatgctatggccaaatgaaactaaatggaaaactcagaaacagctgatgatgtctaacatctttgttttttcctgggacatttatgctcacggtggtgattttatattgcacacatataatatagtcatggttattgcttttaaaattgctcctagtttctttgatggatttaaatttattgctgttttatggagagatagcatattattccaccaggagcatcacagtgtctcattgctctgccacacaaacaaaatttaaacccacccaaatccaaaaatcaccccaaatccctttatccagaataaaaacaatagccattatgtttaggatactgattagcattttaaactatattttaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]