LOCUS       XM_049741165            3801 bp    mRNA    linear   VRT 23-SEP-2024
DEFINITION  PREDICTED: Syngnathus scovelli NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_049741165
VERSION     XM_049741165.1
DBLINK      BioProject: PRJNA863313
KEYWORDS    RefSeq.
SOURCE      Syngnathus scovelli (Gulf pipefish)
  ORGANISM  Syngnathus scovelli
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei;
            Syngnathidae; Syngnathus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_024217435.2-RS_2024_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/18/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Syngnathus scovelli"
                     /mol_type="mRNA"
                     /strain="Florida"
                     /db_xref="taxon:161590"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="body"
                     /dev_stage="adult"
     gene            1..3801
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins"
                     /db_xref="GeneID:125981233"
     CDS             89..3607
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_049597122.1"
                     /db_xref="GeneID:125981233"
                     /translation="

MALFPAFADVSTDKVEDPSHELKWLNNQSFQTSDALSLHNRFLEIKSEGVLQDSSSDRTNEENVPTRKKKKKHGEKKKKHKEKIRRSTQSSGSDSEPIFPSDLKRKQTNRQQAAPVATSFSWLDDLPSPAAQPFCVDSKADASNWTYKSLYRGDVARYKRKGISSLGLDPLKQEVHWEDVNKKHKRGDKKKGADRYFSTACRQLLKSEQPLPTLPRVCESNRVTHSNPFLPLEDIEGEQKGEASQGGRAQSSSVNPLGVYDSTTALWLQGKGKQDEADHPERQNLETGQEAVLLTGQTEEFNRKLREQPEDTQLWLKFIRYQDELGATVFGGEEEQQGKELAERRGKSSYKAVLEKKLSIAERAVATNPSCVALQRERLRICQELWEPAALAKEWKKLVFLHPNSGPLWREYLLFTQSYFSSFSVSKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFIKQCHFLRQSGHAEKALSLFQAMMDFTFFKPDSVRQLPTKQQADFFEPFWDSGEARVGEFDARGWKAWMVQQERGGWLQPCAEEEEEEEEEEEDEVKDRSQPRWTVWLDVESSREAAHWLPWRPDKAKGQSEDDCDDPERQVLFDDIGPSLICLSSPELQLRLLLNFLSFLGLPVDTVLSAGRWQTGLLLEDLSLLTQGSDSRRPLTSHNLSSLGVNPVGHMTTLQGTRKWVGLGKQGEKFVNFMLNMLQPVLPSEQRAVLSLSRMQYEKLKVFRCIQGNKKRLRSQSKISKRMAKSLLKEADNRSSLPMWREFAHLEWMLGNLEEARKVFSATTALGGGKGLCNPSLCELCLLWAQLEVEDGASSPGGVPNHGGAPPAVCVLTRLAEGKALTPSSSSQPVSPVAILKARRSYEQALTTALSTFQANQKTLLQEEKLRLRGLLGCYALFQYLTMGIKAANAVYSQAREQMDELHRTLTSDRNADAPRSGSDPLLDTLACECQMVALQQASLLKYHMSVSVFPLATLRDTLTSALSSWPSSAALWSIYVQVENRYHSAGRARRFFHAVTRDNGSVVPRFFAIVAEQQRKQLVEAAQRSCDKSATLSVLPETGLSNRIGGLFENAIGSEMGAHCPLLWRMYIHYLVSEGKLDKAKGLFYKALQNIPWVKGLYMDAVQLFHEHLQEFVDLMTEKELRVRLPLEELDILLED"

     misc_feature    485..790
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(485..511,518..523,533..538,542..544,548..592,
                     599..607,611..619,647..655,665..670,674..679,686..706,
                     728..739,761..790)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    986..1954
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
     polyA_site      3801
                     /gene="nrde2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gttaaaaaaaaaagtatttgttcaagtcgcattttacatgacgtcatcaatccgcgactacatgttcagcaggcgtaaacagtaaaacatggctctgtttccagcctttgctgatgtgagcactgacaaggttgaagacccatctcatgaattgaagtggttgaataatcagagttttcagaccagcgatgccctgtccctgcataatcgctttttagagatcaaaagtgagggcgtgctccaagactcaagttcagacagaacaaatgaggagaatgtaccaacaaggaagaagaaaaaaaagcatggagaaaaaaagaaaaagcacaaagaaaagattcgacgatcaacacaaagcagtggatcagactctgaaccaattttcccaagtgatctcaagcgaaaacaaacaaacagacaacaggctgctccagtcgcaacttctttctcctggttggatgatcttccgtcgcccgctgcacagccgttctgcgtcgactctaaagctgatgcttccaactggacatacaagtctctatacagaggagatgtcgcaaggtataagaggaaaggcatctcatcactgggtctggatcctctcaaacaagaagtccactgggaggacgtgaataagaaacataaacggggggacaagaagaaaggcgctgacagatacttttccacagcctgtcgtcagttgctcaagtccgagcagcctctcccgacattaccgcgagtttgtgaaagcaatcgtgtcacccactccaacccctttcttccactggaagacattgagggggagcaaaaaggagaggcatcccaaggtggcagagcacaaagttcctcagtgaatccacttggcgtgtacgactccaccactgccctctggctgcagggcaagggaaagcaggatgaggccgatcaccccgaaaggcaaaacctggagacaggacaagaagctgtgcttttgaccggccagactgaagaattcaaccgcaaactgagagagcaaccagaggacactcagctctggctaaaattcattcgatatcaggatgagttgggtgcaaccgtatttggaggtgaggaagagcaacagggcaaagagttagcggagcgccgcggcaagtcttcgtacaaagccgtgctggagaaaaagctgagcattgcggagcgtgctgtggccaccaaccccagctgtgtggctttgcagcgggaaagactccggatctgccaagagctttgggaaccggcggctctggctaaagaatggaagaaactggtctttctccacccaaatagtggccctttatggagggagtatctgctgttcacccagagctacttcagcagcttcagtgtgtcaaaggtgaactctgcttacgggaagtgtctcagcacgctcagcgctgtccgcgatggcagcatggtgtcccacccagccttgccggggattgaagaggatatgctggatatcttcatcaagcagtgtcatttcctccgtcagtccggtcacgcagagaaggcactgtctctctttcaagccatgatggactttaccttcttcaagcctgacagcgtacgacaactgcccaccaagcaacaggctgacttctttgagccgttctgggatagcggggaggcaagagtcggagagtttgatgccagaggttggaaagcgtggatggtccaacaggagcgaggaggatggctccagccctgtgcagaggaagaggaggaggaagaggaggaggaagaggacgaggtgaaggaccgcagccagccacgatggacggtgtggctggatgtggagtcatctcgtgaagctgcgcattggttgccttggagacctgacaaagccaagggccaatcagaagacgactgtgacgacccggagagacaggtgctgttcgacgacatcgggccttccctaatttgcctgtcttcgccagagcttcagcttcgcctcctcctgaattttctgtcgtttctggggctgcctgtggacactgtgctgtctgctggcaggtggcagactggcctgctgttggaggacctttctctgctcactcagggtagtgactcccgacgacctctgacgtcccataacttatcgagccttggggtgaaccctgtgggtcacatgaccaccctccagggaaccaggaaatgggtagggcttggaaagcagggcgagaagtttgtcaacttcatgttgaatatgctccaacctgttcttccgtctgaacaacgagctgttctttcactcagccggatgcagtatgagaaactaaaggtgtttcgttgcattcagggcaacaaaaaacgtctccgctctcagagcaaaatcagcaagcggatggccaaatcgctgctcaaagaagccgacaaccgctcatctttgccaatgtggcgagagttcgcccacttggagtggatgctcggtaacttggaagaggctcgcaaagtgttttccgccaccacggcattgggcgggggcaaagggctgtgtaacccctccctctgtgagctgtgtctactgtgggctcagctggaggtggaggatggagcaagtagtccgggaggggtgcccaaccacggaggtgcacctccggccgtatgcgtgctcaccagacttgccgaggggaaggccttaacgccttcctcgtcgtcgcagcccgtctctccggttgccatcctgaaggccaggaggtcttatgaacaggcgctgacgaccgctttgtccacatttcaggccaaccaaaaaactcttctccaagaagagaagctgaggttgagagggcttctcggctgctacgctctgttccagtacctcacgatgggcatcaaagcggcaaacgcagtctacagccaggcccgagagcagatggacgagctgcaccgtacgctgacgtctgaccggaacgccgatgctccccgctctggcagcgacccgttgctcgacacgttagcttgcgagtgccaaatggtggcgctgcagcaggcctctttgctcaagtaccacatgagcgttagtgtctttccactggcgacgctgagagacacactcacctctgccctttcgagctggccgagcagcgccgctctctggagcatatacgtgcaggtggagaaccgttaccatagtgccggccgggctcgtcgcttttttcacgctgtaacgagggacaacggtagtgtcgtgccgcggttctttgctattgttgctgaacagcaaagaaagcagctggtggaagcagcacagagatcctgcgacaaaagcgccaccttgagtgtcctgccggagaccggtctcagcaaccgtatcggcgggctgtttgaaaacgccataggatccgagatgggcgcccattgtcctttactttggaggatgtacattcactacctggtgtcagagggtaagctggataaagccaagggtctcttctacaaagctttacagaatattccctgggtgaagggattgtacatggatgcggtgcagctgtttcatgagcatctgcaagagtttgtagatctgatgacggagaaagagcttcgagtccgattgccgttggaagaactcgacatattgctggaagactgaatcgaactcgcttgcaaaacggaattactggtaggtagagcagcagaaaaaaaaaagaaagacattgcaaccatttctccagatggaccgagtaaactgaacatgagtaattgaagaaatattattttgtttgtaatttgtatattgaggttttgacatttttatttatgaaataaaatctgacaaaacgtgaa

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