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2025-04-22 05:42:06, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_048977027            1563 bp    mRNA    linear   VRT 12-JUL-2022
DEFINITION  PREDICTED: Brienomyrus brachyistius alkaline ceramidase 1 (acer1),
            transcript variant X3, mRNA.
ACCESSION   XM_048977027
VERSION     XM_048977027.1
DBLINK      BioProject: PRJNA854133
KEYWORDS    RefSeq.
SOURCE      Brienomyrus brachyistius
  ORGANISM  Brienomyrus brachyistius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala;
            Osteoglossomorpha; Osteoglossiformes; Mormyridae; Brienomyrus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064547) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Brienomyrus brachyistius Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Brienomyrus brachyistius"
                     /mol_type="mRNA"
                     /isolate="T26"
                     /db_xref="taxon:42636"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="skeletal muscle"
     gene            1..1563
                     /gene="acer1"
                     /note="alkaline ceramidase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins"
                     /db_xref="GeneID:125709029"
     CDS             196..1005
                     /gene="acer1"
                     /codon_start=1
                     /product="alkaline ceramidase 1"
                     /protein_id="XP_048832984.1"
                     /db_xref="GeneID:125709029"
                     /translation="
MAETSGVFSYESSEVDWCEGNYQHSENVVEFFNTVSSFIFFVVSPLMLYLLHPYARERNLAVHLVWFMMIFVGLFSMYFHMTLSFIGQMLDELSILWVLAIGYSLWFPRRHFPSFIKDRTTFARIVLLMTIVTTLSSFVKPTANAYALNFFAIHILYYVTIELRSCTDQRVLRLARTSIGLWVLAISCWISDRFGCSFWQRLNFCYLHGIWHILIVVATAYGSTLIAYLDAYREIPYSLPDLQYWPSNSWALGLPYITLKEPTKTQKSC"
     misc_feature    220..969
                     /gene="acer1"
                     /note="Region: Ceramidase; pfam05875"
                     /db_xref="CDD:461766"
ORIGIN      
ggtcacactaggatcagaaagcgttaatggagaccagaaaacttttcaagagtgacattttaagtccattaatagaatttttacgtcgaggtctgaagactttctgcacaaaagccgaccagcgatgctgctgttgaccaggctgacagacgtgcatggatttcccgcagcaagcttattaaataagcagagaggatggcagagacgtcgggggtgttttcctacgaaagttcggaggtggactggtgcgagggtaattaccagcattccgaaaacgtggtggagttcttcaacacagtgagcagctttattttctttgtggtctcccccctaatgctgtacctcctgcatccatacgccagggagaggaacctggctgttcacctggtctggttcatgatgatctttgtgggtctcttctccatgtacttccacatgacgctgagcttcatcggtcagatgctggacgagctctctatcctctgggtgctggccatcggctactccctctggttcccccggagacacttcccctccttcattaaggacaggaccacttttgccaggatcgtccttttgatgactatcgtcacgaccctgtcgtccttcgtcaagcctacggctaacgcctatgcactgaacttcttcgccattcacatcctgtattatgtaaccatcgagctgcgcagctgcactgaccagcgtgtgctgcgtttggctcgcacctccatcggcctgtgggtcctcgccatctcctgctggatcagcgatcgtttcggctgcagcttctggcagcggctgaacttctgctacttgcacgggatctggcatatcctgattgtggtagccacggcctatggcagcaccctcatcgcctacttggatgcctaccgtgagatcccttactcactgccagacctgcagtactggccaagtaacagttgggccttaggtctcccttacatcaccctaaaggagcccaccaagacacagaagagctgctaaaggacagtgttacaaagtcacaagtttctcactgacataataccttatgcaacttaaggtctttctaccctccagctccttctcaactgggaataacacttacgtgcattaaatgttgtttacaatacacggaatttcatgcacacatgtgcatgtgagagagaaggtgtttgggagattcacaatctgagcgtaaataacgtcctgtaatgaatgcagttgaaatgtatataatgttttgtatttttttttattaaaatagcctgaaaactgttatgctatgatttttagcatattatttttttagtttttcaaaaaaatggatccctaacttgacaaactcttttggaacaaaagggcagattcgccagtgttattgaagttcacttcttaattcattcctgatggctccagtgaacttcatattattttagccataagctgatgtgtgttgcttctggaaccttccaggcacaccagtgggcatttcagatctgtttttttctgtcatgcagcagaaaataaacttcaagtggatccaaatcccaaataaactat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]