2025-04-22 05:42:06, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_048977027 1563 bp mRNA linear VRT 12-JUL-2022 DEFINITION PREDICTED: Brienomyrus brachyistius alkaline ceramidase 1 (acer1), transcript variant X3, mRNA. ACCESSION XM_048977027 VERSION XM_048977027.1 DBLINK BioProject: PRJNA854133 KEYWORDS RefSeq. SOURCE Brienomyrus brachyistius ORGANISM Brienomyrus brachyistius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Brienomyrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064547) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Brienomyrus brachyistius Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1563 /organism="Brienomyrus brachyistius" /mol_type="mRNA" /isolate="T26" /db_xref="taxon:42636" /chromosome="15" /sex="male" /tissue_type="skeletal muscle" gene 1..1563 /gene="acer1" /note="alkaline ceramidase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:125709029" CDS 196..1005 /gene="acer1" /codon_start=1 /product="alkaline ceramidase 1" /protein_id="XP_048832984.1" /db_xref="GeneID:125709029" /translation="
MAETSGVFSYESSEVDWCEGNYQHSENVVEFFNTVSSFIFFVVSPLMLYLLHPYARERNLAVHLVWFMMIFVGLFSMYFHMTLSFIGQMLDELSILWVLAIGYSLWFPRRHFPSFIKDRTTFARIVLLMTIVTTLSSFVKPTANAYALNFFAIHILYYVTIELRSCTDQRVLRLARTSIGLWVLAISCWISDRFGCSFWQRLNFCYLHGIWHILIVVATAYGSTLIAYLDAYREIPYSLPDLQYWPSNSWALGLPYITLKEPTKTQKSC"
misc_feature 220..969 /gene="acer1" /note="Region: Ceramidase; pfam05875" /db_xref="CDD:461766" ORIGIN
ggtcacactaggatcagaaagcgttaatggagaccagaaaacttttcaagagtgacattttaagtccattaatagaatttttacgtcgaggtctgaagactttctgcacaaaagccgaccagcgatgctgctgttgaccaggctgacagacgtgcatggatttcccgcagcaagcttattaaataagcagagaggatggcagagacgtcgggggtgttttcctacgaaagttcggaggtggactggtgcgagggtaattaccagcattccgaaaacgtggtggagttcttcaacacagtgagcagctttattttctttgtggtctcccccctaatgctgtacctcctgcatccatacgccagggagaggaacctggctgttcacctggtctggttcatgatgatctttgtgggtctcttctccatgtacttccacatgacgctgagcttcatcggtcagatgctggacgagctctctatcctctgggtgctggccatcggctactccctctggttcccccggagacacttcccctccttcattaaggacaggaccacttttgccaggatcgtccttttgatgactatcgtcacgaccctgtcgtccttcgtcaagcctacggctaacgcctatgcactgaacttcttcgccattcacatcctgtattatgtaaccatcgagctgcgcagctgcactgaccagcgtgtgctgcgtttggctcgcacctccatcggcctgtgggtcctcgccatctcctgctggatcagcgatcgtttcggctgcagcttctggcagcggctgaacttctgctacttgcacgggatctggcatatcctgattgtggtagccacggcctatggcagcaccctcatcgcctacttggatgcctaccgtgagatcccttactcactgccagacctgcagtactggccaagtaacagttgggccttaggtctcccttacatcaccctaaaggagcccaccaagacacagaagagctgctaaaggacagtgttacaaagtcacaagtttctcactgacataataccttatgcaacttaaggtctttctaccctccagctccttctcaactgggaataacacttacgtgcattaaatgttgtttacaatacacggaatttcatgcacacatgtgcatgtgagagagaaggtgtttgggagattcacaatctgagcgtaaataacgtcctgtaatgaatgcagttgaaatgtatataatgttttgtatttttttttattaaaatagcctgaaaactgttatgctatgatttttagcatattatttttttagtttttcaaaaaaatggatccctaacttgacaaactcttttggaacaaaagggcagattcgccagtgttattgaagttcacttcttaattcattcctgatggctccagtgaacttcatattattttagccataagctgatgtgtgttgcttctggaaccttccaggcacaccagtgggcatttcagatctgtttttttctgtcatgcagcagaaaataaacttcaagtggatccaaatcccaaataaactat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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