2025-04-22 06:33:08, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_048828625 3830 bp mRNA linear VRT 02-JUL-2022 DEFINITION PREDICTED: Caretta caretta Fc epsilon receptor Ig (FCER1G), transcript variant X2, mRNA. ACCESSION XM_048828625 VERSION XM_048828625.1 DBLINK BioProject: PRJNA853764 KEYWORDS RefSeq. SOURCE Caretta caretta (Loggerhead turtle) ORGANISM Caretta caretta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Caretta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064494) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Caretta caretta Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3830 /organism="Caretta caretta" /mol_type="mRNA" /isolate="SJ_126:Eziel1" /db_xref="taxon:8467" /chromosome="22" /sex="female" /tissue_type="blood" /dev_stage="adult" /collection_date="2020-06-05" /collected_by="Fondazione Cetacea hospital" gene 1..3830 /gene="FCER1G" /note="Fc epsilon receptor Ig; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:125625964" CDS 224..496 /gene="FCER1G" /codon_start=1 /product="high affinity immunoglobulin epsilon receptor subunit gamma isoform X2" /protein_id="XP_048684582.1" /db_xref="GeneID:125625964" /translation="
MKMWLVAGLLLLLRAEGAEALAEPELCYVLDAILFIYGIILTVLYCRLKLQVRNASKAVPSTAYSKEEGIYTGLSTQNQETYETLQTKPN"
misc_feature 290..382 /gene="FCER1G" /note="T-cell surface glycoprotein CD3 zeta chain; Region: TCR_zetazeta; pfam11628" /db_xref="CDD:463313" polyA_site 3830 /gene="FCER1G" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgaagagttaaggagcgagtggggagtgcaggaaggagttgctctgtggttgtggggcgtcttgctgagtcaattgcagcgcccagccccagctcacaccggacagtgtgtctccgccgagcagccggagtggagcagtcgctgctgcctttgccatcccagccccggcgagggagcgatcggactcgtgcggtggctccttggcttgaccccgccggccaggatgaagatgtggctcgtggccggcctgctgctgctcctcagggccgaaggcgcagaggcgctggccgaacccgagctgtgttacgtcctggacgccatcctgttcatctatggcatcatcctcacagtgctctactgccgcctgaagctccaggttcgaaatgcctcaaaagctgtccccagcacagcctatagtaaagaagaagggatctatactgggctcagcactcagaaccaggagacctatgaaaccctccagaccaagcccaattaggagcccagctgtagccccgggtacagcctctgcagaatgaggttgaagggggagcaggtgtcccaagagtgatttatatgagttcctccccagtctcagcaaagaaacaactttgttgaaaccagtggttcccagttgcccccacatgctgaaatgctgggggtgggggtgttgtgcccctgctcgtttacatgtaagacatccttcccctagctgtacattgctccgagactctgcaggatcagcctttcctatcccacctctcttgtgtttccggtgctgaagacctgtagatattctttcccttgtgcctgtcaccaatgccacacagcgagtctccagtgagacgaaggtacggttccatgcacggttcccttcagcagcaaagcaccttgtctaccctgtacagtcaagaactataatgcaaacacctaaaccctcctgagcatctcttggaaacctctggaccaatggagaatcatagaattgcaggactggaaggtgaccttgagaagtcatctagtccagtcccctggacttatggcaggactaagtattatctagaccacccttgacaggtgtttgtctaaccagctcttaaaaatctccaatgatggagattccacaacctccctaggcaatttattccagtatttaactaccctgacaggaaatttttcctaatgtccaacctaaaccacccttgctgcaatttaagcccattgcttcttgtcctctcctcaaaggttaaaggagaacaatttaacctccctcctccttgtaacaaccttttctgtgcttgaaaactgttacgtcccccctcagtcttctcttctccagactaaacaaacccagttttttcaatcttccctcatagctcatgttttcatctttgtcactcttctctggactttctccaatttgtccacatccttcctgaaatatggtgcccagaactgaacacaatactccagccgaggcctaatcagcgcggagtagagtggaagaattacttctcgcttgctccctggtaatgatagtgtctgtcctggggagcagggaatattcccttctctgtgcttgtaagtcactggctttggtcatgtgttttggctgccttgatggctttgccttggtgcacagaggcggccccacaccacagcatctgtgcttccacagacagagacttaatactatgccggctccctgctccatgtctgccacatggccgctatttccctggcctgacctcagtggtggctgctggtttatcagtgatggagatgtgggtataacatttcccttagatggcctgatggcgtggggctaaagggcggctcagttcagactcagaggaaaggcatttgctaggttctgctgtcaccctttggctggtcttcctttgcacatgggtaggcgtagtaacacaggttgataaagggagtgatgaggctgaggatagcacctccccctttcactggagttgtaaagagctgaaaagctcttgaagccagtgtttgagatcagaaactgggccaggctgagatgctacgattagctttcacctctaggttcccagttcaaatcccatccaggctgcaggtgcacagatcattgccctctgatggtgaataaatacaccctgggaaaagggttggtaggtttccgtccaggtcccagtggagcaggaggtaatgtacttctcctgctggtacccgcgctgcctctggcccatcactagacagagggcccccacctctaaggtggtccttcagcaacccacagcagtgaatttacagcacaacttttataaattattgacaggcccagattttcagaactgcctgtgaatattcggatgcctgatttgcacctgcatttaccgtagctgtgcctgcagtccctgtcggcgcccacacacccattccctgctccctgtgtgatgggccatttgtgtccatggaattctgaacctcagggctttacattttaaaacttcaccttcccctgctgagtcccaagttcaaggcctggtattttccatgaaagaactggtgccatcgctgatggatagggccggtggtaggcacaggaaagctctgtgttagatataagtcatcccataaactcctgcaaaagaaagacaggcccctgacctcagagctttgcaggtaagttgaagaggaccccttttcaaatattaggtttccaagtgcaatctcattttgggatctgcctagccctggcagacgggcacacagcaatcctaccaaaaggtgcaattgcagctgagcatcagttggaatcttttcataagagcaacatacctgggtatcgcaactagagtaagcgcagggaatttttgaccatgctgttagggcttatcagagcacatgatggcaggagcaaatcatccctctgcgttcctgagccatcagatcaaggctttcgtgtgtatagttgaatgctgctcccttcccattgcttcttatcgtacatggtttgttttgggtattgcctctggatcacttttctccactggtccagcaacaggctccagaaacaccaggagaaagtgtacatcagtttctaccaatgctaggacaaaatgttgaagtgtgcagagctgtttattcttctaggagcacctggatctctttctgccaatgtaacccttgaagaatagacaccccctttttttttattgagctgaatgcttaaaaattttatttttaaataaagctttaagcagcggtattataccccatgacattgcaaagccaatcgggtgcttgcacttggagaaggtgggataaaagccatcctttatggcaaataccgccatgcactggggacaaagtgccacgtctataggaattaataaagcagaataggtcattgccagagctggctggagaaaggcaattccctctcaagacaacttttgagggtttgaaacttggttttgttccacgttggaatgaaaacaaaacctttccaacagaattgtgtccaaatgtctttcttctgctcggaaaggtcaggttttcaattctgctgtcttgctctctgactggatagtccaccctggacctcagaaaccttccactcaaactgatttcttcagaatcagtacaactatgtgaaatgtttcagctttgactaaacagcatatttggatgaaaaaaagtttattttaaaatgttccagccagctctaggcatgtctgaatataatagtgctacagaaattaagattttttccttaatgtcttgaatgtattgtactatactggctcatgtaatttttctctcattaaaatgtgtatacagga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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