2024-11-15 13:28:10, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_046323297 1671 bp mRNA linear VRT 05-MAR-2022 DEFINITION PREDICTED: Oncorhynchus gorbuscha uncharacterized protein DKFZp434B061-like (LOC124010627), mRNA. ACCESSION XM_046323297 VERSION XM_046323297.1 DBLINK BioProject: PRJNA726253 KEYWORDS RefSeq; includes ab initio. SOURCE Oncorhynchus gorbuscha (pink salmon) ORGANISM Oncorhynchus gorbuscha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060195) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oncorhynchus gorbuscha Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1671 /organism="Oncorhynchus gorbuscha" /mol_type="mRNA" /isolate="QuinsamMale2020" /db_xref="taxon:8017" /sex="male" /tissue_type="Multiple" /dev_stage="Spawning" /ecotype="Even-year" /collection_date="2020-07-28" /collected_by="Quinsam River Hatchery" /linkage_group="LG23" gene 1..1671 /gene="LOC124010627" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:124010627" CDS 1..1671 /gene="LOC124010627" /codon_start=1 /product="uncharacterized protein DKFZp434B061-like" /protein_id="XP_046179253.1" /db_xref="GeneID:124010627" /translation="
MSTPQYNSNTRHNPKPKRNHNPCFMSTPQYNSNTRHNPKPKHAVLPPSTPDAALPPSTPDAALPPSTPDAALPPSTPDAALPLSFPDAALPLSTPDAALPLSTPDAALPLSTPDAALPPSTPDAALPLSTPDAALPLSTPDAALPPSTPDAALPLSTPDAALSPSTPDAALPLSTPDAALPLSTPDAALPPSSPDAALPLSTPDAALPPSTPDAALPPSTPDAALPPSTPDAALPLSTPDAALPPSTPDAALPLSTPDAALPLSTPDAALPLSTRCSSATFHPRCSSPLSTPDAALPLSTPDAALPLSTPDAALPLSTPDAALPLSTPDAALPLSTPDAALPLSTPDAALPLSTPESSAALPQLPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQICHFPPQMQLCHLPPQMQLCHFPPQMQLPPQMQLCHLPPQMQLCHLPPQMQLCHFPPQMQLCHFPPQMQLCHLPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMQLCHFPPQMRKADIDGCERFLA"
misc_feature <112..1407 /gene="LOC124010627" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <1228..>1629 /gene="LOC124010627" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:401645" ORIGIN
atgtccacaccccagtacaactccaacactagacataaccccaagcctaaacgtaaccacaacccttgcttcatgtccacaccccagtacaactccaacactagacataaccccaagcctaaacatgcagttctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccttcccagatgcagctctgccactttccaccccagatgcagccctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgtcaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccaccttccagcccagatgcagctctgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccacccgatgcagctctgccactttccaccccagatgcagctctccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagagagctctgcagctctgccacagcttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatttgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagcttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccaccttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcagctctgccactttccaccccagatgcggaaggctgacatcgacggatgcgagagatttctagcttaa
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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