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2024-11-15 13:27:46, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_046299832            3561 bp    mRNA    linear   VRT 05-MAR-2022
DEFINITION  PREDICTED: Oncorhynchus gorbuscha dentin sialophosphoprotein-like
            (LOC123996463), partial mRNA.
ACCESSION   XM_046299832
VERSION     XM_046299832.1
DBLINK      BioProject: PRJNA726253
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Oncorhynchus gorbuscha (pink salmon)
  ORGANISM  Oncorhynchus gorbuscha
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060187) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oncorhynchus gorbuscha Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 47% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Oncorhynchus gorbuscha"
                     /mol_type="mRNA"
                     /isolate="QuinsamMale2020"
                     /db_xref="taxon:8017"
                     /sex="male"
                     /tissue_type="Multiple"
                     /dev_stage="Spawning"
                     /ecotype="Even-year"
                     /collection_date="2020-07-28"
                     /collected_by="Quinsam River Hatchery"
                     /linkage_group="LG15"
     gene            <1..3561
                     /gene="LOC123996463"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:123996463"
     CDS             <1..3561
                     /gene="LOC123996463"
                     /codon_start=1
                     /product="dentin sialophosphoprotein-like"
                     /protein_id="XP_046155788.1"
                     /db_xref="GeneID:123996463"
                     /translation="
TTLSLPLSLSLSLSLSHWCFCEMFCQHADSSDSSDSYDIYDSYDSSDISDSSDSSDISDSSDISDSSDIADSSDSYDIADSSDSYDIADSSDSSDSSDISDSYDIADSSDSSDISDSSDISDSSDIADSSDSYDIADSSDSYDISDSSDSYDISDSSDSYDISDSSDSSDISDSSDISDSSDIADSSDSYDISDSSDSSDISDSSDISDSSDIADSSDSYDIADSSDSYDIADSSDSSDSSDISDSYDIADSSDSSDISDSSDISDSSDIADSSDSYDIADSSDSYDSSDSSDSSDSSDSSDSYDIADSSDSYDIADSSDSYDIADSSDSSDSSDISDSYDIADSSDSSDISDSSDISDSSDIADSSDSYDIADSSDSYDIADSSDSSDSSDSSDSSDISDSYDIADSSDSSDISDSSDSSDIADSYDIADSSDSSDSCDISDSYDIADSSDIADSSDIADSSDSYDSYDIADSSDSYDSYDIADSSDSYDSSDSSDSYDIADSSDSYDIADSSDSYDIADSSDSSDIADSSDSYDIADSSDSYDIADSSDSYDIADSSDSSDIADSSDSSDSSDISDISDIADSSDSYDISDISDISDSSDSYDSYDIADSSDSYDISDISDSSDISDSSDSSDSSLTLAPLHPSTMLVIGRPSPRIGESRSSQRVTQLTESHAAHGESRSSRRVTQLTKSHAAHEESRSSRRVTQLTESHAAHEESRSSRRVTQLTKSHAAHEESRSSRRVTQLTKSHAAHGESRSSRRVTQLTKSHAAHGESRSSRRVTQLTKSHAAHRESRSSRRVTQLTTESHAAHDGESRSSRRRVTQLTTESHAAHGESRRVTQLTTESHAAHGESRSSRRVTQLTTESHAAHDGESRSSRRVTQLTTESHAAHGESRSSRRVTQLTESHAAHGESRSSWRVMQLTTESHAAHGESRSSRRIVTQLMESHAAHGESRSSRRRVTQLMESHAAHGESRSSRRVTQLTTESHAAHDGESRSSRRMVTQLTTESHAAHDGESRSSRTVTQLTDSHAAHDGESRSSRRRVTQLTTESHAAHDGESRSSRRRATQLTTESHAAHDGESRSSRRATQLTESHAAHRESRSSRRRATQLTESHAAHRESRSSRKVTQLTTESHAAHDGEPRSSRRVTQLTESHTAHGESRSSRRATQLTESHAEGEIVCSSSSRAE"
ORIGIN      
accactctctctctccctctctctctctctctctctctttctctctctcactggtgtttctgtgagatgttctgtcaacacgctgacagctctgatagctctgatagctatgatatctatgatagctatgatagctctgatatctctgacagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgatagctctgatagctctgatagctctgatatctctgatagttatgatatcgctgatagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatctctgacagctctgatagttatgatatctctgacagctctgatagttatgatatctctgacagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatctctgacagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgatagctctgatagctctgatagctctgatatctctgatagttatgatatcgctgacagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatagctctgatagctctgatagctctgatagctctgatagctctgatagttatgatatcgctgatagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgatagctctgatagctctgatagctctgatatctctgatagttatgatatcgctgatagctctgatagctctgatatctctgatagctctgatatctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgatagctctgatagctctgatagctctgatagctctgatagctctgatatctctgatagttatgatatcgctgatagctctgatagctctgatatctctgatagctccgatagctctgatatcgctgatagttatgatatcgctgatagctctgatagctctgatagctgtgatatctctgatagttatgatatcgctgatagctctgatatcgctgatagctctgatatcgctgatagctctgatagttatgatagttatgatatcgctgacagctctgatagttatgatagttatgatatcgctgacagctctgatagttatgatagctctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagctctgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagttatgatatcgctgacagctctgatagctctgatatcgctgacagctctgatagctctgatagctctgatatctctgatatctctgatatcgctgacagctctgatagctatgatatctctgatatctctgatatctctgacagctctgatagttatgatagttatgatatcgctgacagctctgatagctatgatatctctgatatctctgacagctctgatatctctgatagctctgacagctctgatagctccttaacccttgctcctttgcaccccagcactatgctggtgatcggcaggcccagcccaagaataggagagtcacgcagctcacagagagtcacgcagctcacggagagtcacgcagctcacggagagtcacgcagctcacgaagagtcacgcagctcacgaagagtcacgcagctcacgaagagtcacgcagctcacgaagagtcacgcagctcacggagagtcacgcagctcacgaagagtcacgcagctcacgaagagtcacgcagctcacaaagagtcacgcagctcacgaagagtcacgcagctcacggagagtcacgcagctcacgaagagtcacgcagctcacggagagtcacgcagctcacgaagagtcacgcagctcacgaagagtcacgcagctcacggagagtcacgcagctcacggagagtcacacagctcacgaagagtcacgcagctcacagagagtcacgcagctcacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacggagagtcacggagagtcacgcagctcacgacggagagtcacgcagctcacggagagtcacgcagctcacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacggagagtcacgcagctcacgacggagagtcacgcagctcatggagagtcacgcagctcacggagagtcacgcagctcacggagagtcacgcagctcatggagagtcacgcagctcatggagagtcatgcagctcacgacggagagtcacgcagctcacggagagtcacgcagctcacgacggatagtcacgcagctcatggagagtcacgcagctcacggagagtcacgcagctcacgacggagagtcacgcagctcatggagagtcacgcagctcacggagagtcacgcagctcacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggatggtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacggacagtcacgcagctcacggacagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagtcacgcagctcacgacggagagccacgcagctcacgacggagagccacgcagctcacgacggagagtcacgcagctcacggagagccacgcagctcacggagagtcacgcagctcacagagagtcacgcagctcacgacggagagccacgcagctcacggagagtcacgcagctcacagagagtcacgcagctcacggaaagtcacgcagctcacgacagagagtcacgcagctcacgacggagagccacgcagctcacggagagtcacgcagctcacggagagccacacagctcacggagagtcacgcagctcacggagagccacgcagctcacggagagtcacgcagagggagagattgtctgctcttccagttccagggctgaatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]