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2025-04-22 05:08:49, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_045776746            1152 bp    mRNA    linear   MAM 05-MAR-2022
DEFINITION  PREDICTED: Ursus americanus alkaline ceramidase 1 (ACER1), mRNA.
ACCESSION   XM_045776746
VERSION     XM_045776746.1
DBLINK      BioProject: PRJNA795466
KEYWORDS    RefSeq.
SOURCE      Ursus americanus (American black bear)
  ORGANISM  Ursus americanus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae;
            Ursus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025578253) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ursus americanus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Ursus americanus"
                     /mol_type="mRNA"
                     /isolate="UA15103"
                     /isolation_source="kidney"
                     /db_xref="taxon:9643"
                     /chromosome="Unknown"
                     /ecotype="Eastern"
                     /geo_loc_name="USA: Penobscot nation, Maine"
                     /lat_lon="45.745671 N 68.499951 W"
                     /collection_date="2015-05-18"
     gene            1..1152
                     /gene="ACER1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 75% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:123779025"
     CDS             1..792
                     /gene="ACER1"
                     /codon_start=1
                     /product="alkaline ceramidase 1"
                     /protein_id="XP_045632702.1"
                     /db_xref="GeneID:123779025"
                     /translation="
MPSIFAYQSSEVDWCESNFQHSELVAEFYNTFSNVTFFIFGPLMMFLMHPYAQKRSCYVYVTCILFMVVGLFSMYFHMTLSFLGQLLDEIAILWLLASGYSIWMPRCYFPTFLGENRPQFICLVITTTVVSTFLSFLRPVVNAYALNSIAVHILYIVFQEYKRTSNKELRHIMEVSVVLWAFALTSWISDRLLCSFWQQINFFYLHSIWHVLISITFPYGMVTMALVDARYEMPGQTLKVRYWPRDTWPVGLPYVEVSDDKNC"
     misc_feature    16..768
                     /gene="ACER1"
                     /note="Region: Ceramidase; pfam05875"
                     /db_xref="CDD:461766"
ORIGIN      
atgcccagcatcttcgcctaccagagctccgaggtggactggtgtgagagtaactttcagcactcggagctggtggccgagttctacaacacgttcagcaatgtcaccttcttcatctttgggcctctcatgatgtttctgatgcacccctacgcccagaaacgctcatgctatgtttatgtcacctgcatcctcttcatggtcgtaggcctgttctccatgtacttccacatgacgcttagcttcctgggccagctgctggatgagatcgctatcctgtggctgctggccagtggctacagtatatggatgccccgctgctacttccccactttcctaggagaaaacaggccccagttcatctgcctggtcatcaccaccaccgtggtcagcaccttcctgtccttcctgaggcccgtggtcaacgcgtacgccctcaacagcattgctgtgcatattctgtacatcgtgttccaggaatacaagaggaccagcaataaggagcttcggcatataatggaggtctccgtagttttatgggcttttgcgttgaccagctggatcagtgaccgcttgctctgcagtttctggcagcagatcaatttcttttacctgcatagcatctggcatgtactcatcagcatcacctttccttatggcatggttaccatggccttagtggacgccaggtacgagatgccaggtcaaaccctcaaagtccgctactggcctcgggacacttggcctgtggggctgccctacgtggaagtcagtgatgacaagaactgctgatgtctgccagtttcttgactacccaagcacccgccaactcacctgtgtcttgaagacggaggcctgggtcaggagtctgagagatgctcatggttctttcctctacctccctttctccatcctccttgtcctgtgtggccccgccccaagacaggggatggacttcatgagccttccgcgcggcagtctgatgaccctgggtgagctgccgggcatagcttcccctccacgacctgcccttattctccttcatttcctcctttgtgttcacttgtgaggctggatcaccaggtgctgtgattacctggcagccactgggaatgacttcaggctggggcttggtgcccgggcacctcataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]