2025-04-22 05:08:49, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_045776746 1152 bp mRNA linear MAM 05-MAR-2022 DEFINITION PREDICTED: Ursus americanus alkaline ceramidase 1 (ACER1), mRNA. ACCESSION XM_045776746 VERSION XM_045776746.1 DBLINK BioProject: PRJNA795466 KEYWORDS RefSeq. SOURCE Ursus americanus (American black bear) ORGANISM Ursus americanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025578253) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ursus americanus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1152 /organism="Ursus americanus" /mol_type="mRNA" /isolate="UA15103" /isolation_source="kidney" /db_xref="taxon:9643" /chromosome="Unknown" /ecotype="Eastern" /geo_loc_name="USA: Penobscot nation, Maine" /lat_lon="45.745671 N 68.499951 W" /collection_date="2015-05-18" gene 1..1152 /gene="ACER1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:123779025" CDS 1..792 /gene="ACER1" /codon_start=1 /product="alkaline ceramidase 1" /protein_id="XP_045632702.1" /db_xref="GeneID:123779025" /translation="
MPSIFAYQSSEVDWCESNFQHSELVAEFYNTFSNVTFFIFGPLMMFLMHPYAQKRSCYVYVTCILFMVVGLFSMYFHMTLSFLGQLLDEIAILWLLASGYSIWMPRCYFPTFLGENRPQFICLVITTTVVSTFLSFLRPVVNAYALNSIAVHILYIVFQEYKRTSNKELRHIMEVSVVLWAFALTSWISDRLLCSFWQQINFFYLHSIWHVLISITFPYGMVTMALVDARYEMPGQTLKVRYWPRDTWPVGLPYVEVSDDKNC"
misc_feature 16..768 /gene="ACER1" /note="Region: Ceramidase; pfam05875" /db_xref="CDD:461766" ORIGIN
atgcccagcatcttcgcctaccagagctccgaggtggactggtgtgagagtaactttcagcactcggagctggtggccgagttctacaacacgttcagcaatgtcaccttcttcatctttgggcctctcatgatgtttctgatgcacccctacgcccagaaacgctcatgctatgtttatgtcacctgcatcctcttcatggtcgtaggcctgttctccatgtacttccacatgacgcttagcttcctgggccagctgctggatgagatcgctatcctgtggctgctggccagtggctacagtatatggatgccccgctgctacttccccactttcctaggagaaaacaggccccagttcatctgcctggtcatcaccaccaccgtggtcagcaccttcctgtccttcctgaggcccgtggtcaacgcgtacgccctcaacagcattgctgtgcatattctgtacatcgtgttccaggaatacaagaggaccagcaataaggagcttcggcatataatggaggtctccgtagttttatgggcttttgcgttgaccagctggatcagtgaccgcttgctctgcagtttctggcagcagatcaatttcttttacctgcatagcatctggcatgtactcatcagcatcacctttccttatggcatggttaccatggccttagtggacgccaggtacgagatgccaggtcaaaccctcaaagtccgctactggcctcgggacacttggcctgtggggctgccctacgtggaagtcagtgatgacaagaactgctgatgtctgccagtttcttgactacccaagcacccgccaactcacctgtgtcttgaagacggaggcctgggtcaggagtctgagagatgctcatggttctttcctctacctccctttctccatcctccttgtcctgtgtggccccgccccaagacaggggatggacttcatgagccttccgcgcggcagtctgatgaccctgggtgagctgccgggcatagcttcccctccacgacctgcccttattctccttcatttcctcctttgtgttcacttgtgaggctggatcaccaggtgctgtgattacctggcagccactgggaatgacttcaggctggggcttggtgcccgggcacctcataa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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