2024-11-15 13:57:49, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045753933 1854 bp mRNA linear INV 10-JAN-2022 DEFINITION PREDICTED: Procambarus clarkii proline-rich extensin-like protein EPR1 (LOC123765388), mRNA. ACCESSION XM_045753933 VERSION XM_045753933.1 DBLINK BioProject: PRJNA793253 KEYWORDS RefSeq; includes ab initio. SOURCE Procambarus clarkii (red swamp crayfish) ORGANISM Procambarus clarkii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059613) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Procambarus clarkii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1854 /organism="Procambarus clarkii" /mol_type="mRNA" /strain="Jiangsu" /host="Homo sapiens" /db_xref="taxon:6728" /geo_loc_name="China:Nanjing, Hongze Lake" /lat_lon="31.14 N 118.22 E" /collection_date="2018-05-09" /linkage_group="LG43" gene 1..1854 /gene="LOC123765388" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:123765388" CDS 1..1854 /gene="LOC123765388" /codon_start=1 /product="proline-rich extensin-like protein EPR1" /protein_id="XP_045609889.1" /db_xref="GeneID:123765388" /translation="
MFQLKLQVLNSSISYTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPLPVALTSPCIDPPPVALTSPCIDPLPVALTSPCIDPPPVALTSPCIDPLPIALTSPCIDPLPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIVPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVAMTSPCIDPPPVALTSPCIDPLPVALTSPCIEPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPLVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPLPVALTSPCIDPPTVALTSPCIDPPPVALTSPCIDPPPVALTSPCIDPPPVTLTSPCIDPPPVTLTSPCIDPPTVALTSPCIDPPTIALTSPCIDPLPVALTSPCIDPPTVALTSPCIDPPTVALTSPCIDPPTVALTSPCIDPPPVTLTSPCIDPPPVTLTSPCIDPPPVALTSPCIDPPPVALTSPCIDRPVALTFL"
misc_feature <133..1581 /gene="LOC123765388" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 1564..>1809 /gene="LOC123765388" /note="Formin Homology Region 1; Region: Drf_FH1; pfam06346" /db_xref="CDD:461881" ORIGIN
atgtttcaattaaaattacaagttttgaattcaagtatttcttatacctctccgtgtattgaccctccacccgtagctctgacctctccatgtattgaccctccacctgtagcactgacctctccatgtattgaccctccacctgtagcactgacctctccatgtattgaccctctacctgtagctctgacctctccatgtattgaccctccacccgtagcattgacctctccatgtattgaccctctacctgtagctctgacctctccatgtattgaccctccacccgtagcattgacctctccatgtattgaccctctacctatagcattgacctctccatgtattgaccctctacctgtagctctgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacccgtagctctgacctctccatgtattgtccctccacccgtagctctgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacccgtagcaatgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctctacctgtagctctgacctctccatgtattgagcctccacctgtagcactgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacctgtagctctgacctctccatgtattgaccctccacctgtagcactgacctctccatgtattgaccctccactcgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccctctacccgtagcactgacctctccatgtattgaccctccaaccgtagcactgacctctccatgtattgaccctccacccgtagctctgacctctccatgtattgaccctccacccgtagctctgacctctccatgtattgaccctccacccgtaactctgacctctccatgtattgaccctccacccgtaactctgacctctccatgtattgaccctccaaccgtagctctgacctctccatgtattgaccctccaaccatagctctgacctctccatgtattgaccctctacccgtagcactgacctctccatgtattgaccctccaaccgtagctctgacctctccatgtattgaccctccaaccgtagctctgacctctccatgtattgaccctccaaccgtagctctgacctctccatgtattgaccctccacccgtaactctgacctctccatgtattgaccctccacccgtaactctgacctctccatgtattgaccctccacccgtagctctgacctctccatgtattgaccctccacccgtagcactgacctctccatgtattgaccgacccgtggcactgaccttcctgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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