2024-11-15 13:40:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045744448 3482 bp mRNA linear INV 10-JAN-2022 DEFINITION PREDICTED: Procambarus clarkii traB domain-containing protein-like (LOC123759413), transcript variant X2, mRNA. ACCESSION XM_045744448 VERSION XM_045744448.1 DBLINK BioProject: PRJNA793253 KEYWORDS RefSeq. SOURCE Procambarus clarkii (red swamp crayfish) ORGANISM Procambarus clarkii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059593) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Procambarus clarkii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3482 /organism="Procambarus clarkii" /mol_type="mRNA" /strain="Jiangsu" /host="Homo sapiens" /db_xref="taxon:6728" /geo_loc_name="China:Nanjing, Hongze Lake" /lat_lon="31.14 N 118.22 E" /collection_date="2018-05-09" /linkage_group="LG23" gene 1..3482 /gene="LOC123759413" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns" /db_xref="GeneID:123759413" CDS 185..3316 /gene="LOC123759413" /codon_start=1 /product="filaggrin-like isoform X1" /protein_id="XP_045600404.1" /db_xref="GeneID:123759413" /translation="
MTSLGDFHNVSRAEVVTDVLNITEGEEALELASNDMSKSLDISQMSLESESMDSEVMDTAADSSRESALQSPDSAIGVTPTLTPEQEFQNTIPEKLSERPIQFIEDTQTSIQVEQNSELVESGAEREKDDQRTQDLEQQQLEESGGVGEIWYSPGTPVEIYSLPSTSFSSIVVENENVESNKRKEGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRRSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSKGSHDVSRGSKGSHDLSWRSKGSHDLSRRSEGSHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDESRRGEGGHDVSRGSEGSHDVSRGSEGSHDVSQGSEGSHDVSRGSKGRHDVSQGSEGSHDVSQGSEGSHDLSRGSKGSHDVSRGSEGSHDVSRGSKGSDDASRGSKGSHDVSRGSEGSHGVSRGSKGSHGVSRGSEGCHGVSRGSEGCHDVSRGSEGCHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSSEVSRGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPR"
misc_feature <881..>1792 /gene="LOC123759413" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature <1541..>2326 /gene="LOC123759413" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature <2333..>3310 /gene="LOC123759413" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature <3104..>3310 /gene="LOC123759413" /note="ORF080 virion core protein; Provisional; Region: PHA02682" /db_xref="CDD:177464" ORIGIN
accacccccccggcgagtgccaccgtacgcacgagtgcctctaaattcgagggtcgtgataaaacaagttgggggagaggaggatccgcccgccaggtggtggcgggggggaaacttaaggcctctgtgccagttctaggaatggactcgcaaagtcctgtgtggtgaagaatttagtggctagatgacgtcattgggcgacttccacaatgtaagtcgggcagaggtggtgacagatgtcctgaatataacagagggcgaggaggcactagagttggctagcaatgacatgtcaaagtcacttgacatttcacaaatgtctttagaaagtgaatccatggatagtgaagtcatggatacagctgcagactcctccagggagtcggccctacagtcgccagactctgccattggtgtaacgcctaccttgacacctgaacaagagttccagaacactattcctgagaagctctctgaaaggcctatacaattcatagaagatacacaaacatcaatacaggtagagcagaatagtgaactcgttgaatctggggcagagagagaaaaagatgatcagagaacacaagatctggagcaacagcagttagaagagagtggtggagttggagagatctggtattcgcctggaactccagtggaaatttatagtctaccatcaacgtccttttcatcaattgttgttgaaaatgagaatgtggaaagtaacaaaaggaaagaaggccatgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgaaggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcaaaggcagccatgatgtgtcccgagggagcaaaggcagccacgatttgtcctggaggagcaaaggcagccacgatttgtcccggaggagcgaaggcagccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtctcgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgagtcccgaaggggcgaaggcggccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcaggcacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatttgtcccgggggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcagcgacgatgcgtcccgagggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacggtgtgtcccgggggagcaaaggcagccacggtgtgtcccgggggagcgaaggctgccacggtgtgtcccgggggagcgaaggctgccacgatgtgtcccgggggagcgaaggctgccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagctctgaggtgtcccgggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccagggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtaaagcaacaccaaattagtgtggataaaatggaagttgacaatattgcaaggttatccacttcgctaagtcggttacggataagctatattccaccattaattactctctctcgagaagttgtagaaaatttcagcgttgctcagatgacgagcatgacccaagaaat
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]