2024-11-15 13:15:21, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045730031 1631 bp mRNA linear INV 10-JAN-2022 DEFINITION PREDICTED: Procambarus clarkii WAS/WASL-interacting protein family member 3-like (LOC123747826), partial mRNA. ACCESSION XM_045730031 VERSION XM_045730031.1 DBLINK BioProject: PRJNA793253 KEYWORDS RefSeq; includes ab initio. SOURCE Procambarus clarkii (red swamp crayfish) ORGANISM Procambarus clarkii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025553059) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Procambarus clarkii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..1631 /organism="Procambarus clarkii" /mol_type="mRNA" /strain="Jiangsu" /host="Homo sapiens" /db_xref="taxon:6728" /chromosome="Unknown" /geo_loc_name="China:Nanjing, Hongze Lake" /lat_lon="31.14 N 118.22 E" /collection_date="2018-05-09" gene 1..>1631 /gene="LOC123747826" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:123747826" CDS 1..>1631 /gene="LOC123747826" /codon_start=1 /product="WAS/WASL-interacting protein family member 3-like" /protein_id="XP_045585987.1" /db_xref="GeneID:123747826" /translation="
MRCIPAVSSIPAVSRPIPAVSRPIPSVSRPIPALSRPIPALSRPIPALSRPIPALSRPIPSVSIPIPALSRPIPAVSRPIPSVSRPIPALSRPIPALSGPIPALSIPIPALSRPIPALSRPIPALSRPIPALSSIPDLSRPIPALSRPIPALSRPIPALSRPIPALSRPIPALSRPIPALSRPIPALSRPIPSVSRPIPAVCRPIPALSRPIPAVSRPIPAVSRPIPAVSRPIPALSIPIPAVSRPIPAVSRPIPALSRPIPAVSRPIPAVSRPIPALSRPIPALSPGNTNRYVDLIPVQTLLMAVQVPLILGVTRRQSNEPLRQANGPLRQANGPLRQANGPLRQANGTLRQANGPLRQANGTLRQANGTLRQANGPLRQANGTLRQANGPLRQANGPLRQANGTLRQANGTLRQANGPLRQANGPLRQANGPLRQANGPLRQANGPLRQANGPLRQANDPLRQANGSLRQANDPLRQANGPLRQANGPLRQANDPLRQANGPLRQANGPLRQANGPLRQANGPLRQANGPLRQANGSLDIQS"
misc_feature <22..>384 /gene="LOC123747826" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature <283..1194 /gene="LOC123747826" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" misc_feature 943..1590 /gene="LOC123747826" /note="Laminin Domain I; Region: Laminin_I; pfam06008" /db_xref="CDD:310534" misc_feature 973..1017 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1036..1083 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1087..1146 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1150..1209 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1213..1272 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1276..1335 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1339..1395 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1402..1461 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1465..1524 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" misc_feature 1528..1584 /gene="LOC123747826" /note="FHA beta-helical repeat [structural motif]; Region: FHA beta-helical repeat" /db_xref="CDD:293785" ORIGIN
atgaggtgtataccagctgtgagcagtattccagctgtcagcagacctataccagctgtgagcagacctataccatctgtgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccatctgtgagcatacctataccagctctgagcagacctataccagctgtgagcagacctataccatctgtgagcagacctataccagctctgagcagacctataccagctctgagcggacctataccagctctgagcatacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagtataccagatctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccagctctgagcagacctataccatctgtgagcagacctataccagctgtgtgcagacctatcccagctctgagcagacctataccagctgtcagcagacctataccagctgtcagcagacctataccagctgtgagcagacctataccagctctgagcatacctataccagctgtcagcagacctataccagctgtcagcagacctataccagctctgagcagacctataccagctgtcagcagacctataccagctgtcagcagacctataccagctctgagcagacctataccagctctgagccctggaaacacaaaccgttatgtagacctaattcctgttcagactttgctaatggctgttcaagttcccttgatcctgggcgtcactcggaggcagtctaatgagccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggcacacttaggcaggctaatggcccacttaggcaggctaatggcacacttaggcaggctaatggtacacttaggcaggctaatggcccacttaggcaggctaatggtacacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggtacacttaggcaggctaatggtacacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggtccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggcccactcaggcaggctaatgatccacttaggcaggctaatggctcacttaggcaggctaatgacccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatgacccacttaggcaggctaatggtccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggcccacttaggcaggctaatggctcattggatatccagtc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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