2024-11-15 13:26:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045727441 4418 bp mRNA linear INV 10-JAN-2022 DEFINITION PREDICTED: Procambarus clarkii chorion peroxidase-like (LOC123746143), mRNA. ACCESSION XM_045727441 VERSION XM_045727441.1 DBLINK BioProject: PRJNA793253 KEYWORDS RefSeq. SOURCE Procambarus clarkii (red swamp crayfish) ORGANISM Procambarus clarkii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059657) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Procambarus clarkii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4418 /organism="Procambarus clarkii" /mol_type="mRNA" /strain="Jiangsu" /host="Homo sapiens" /db_xref="taxon:6728" /geo_loc_name="China:Nanjing, Hongze Lake" /lat_lon="31.14 N 118.22 E" /collection_date="2018-05-09" /linkage_group="LG87" gene 1..4418 /gene="LOC123746143" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns" /db_xref="GeneID:123746143" CDS 177..2609 /gene="LOC123746143" /codon_start=1 /product="chorion peroxidase-like" /protein_id="XP_045583397.1" /db_xref="GeneID:123746143" /translation="
MRLRSWLLVAALGTLVASLQAQEDSSDVPEELHGTRVARQLARRRQSRQRFQVGRGGLVGAAAGGGGCVCVPLVVCGSHIDQLQQSCTTSGGAPGVCCPPSSLTAPTRSAQATARLFPGVNNVVRLDPLDPTRFLASLDAGVKSFNDIRSVESNLIRDLVTLPIFSPAGQHLQFFTVEDEGREMDRRATIIALVARSIARDFQLTPQQAAFGLRNLLVSDTKLRDLCPQNPRCTPNSKYRTADGSCNNLANPTWGMSNTPTQRILPPTYDDGIHGARSRSVDGSPLPNVRQISSNVFLDINRPDQFYTTILMQWGQFLDHDFAHVPFPTMENGTGIQCCPNGTMAPNLHPRCLPIDTTGDAFYGPRGSRCMNFVRSMLAVGPGPGCNFGFSEQLNQITHWLDGSAVYGSTPNQQRAVRSFRNGLLRTSGNNLLPINPNQNTSGICQGMQRGALCYLAGDSRVNQHPHLTTIQILFLREHNRVARELQALNPQWSDEAVFQETRRIVAAIIQHITYNEFLPIVLGNNYMNTYGLSPRLYGYSNNYNPNINPNMNIEFSTAAYRFGHSVAQGTLRLFTANGGVDTVRLRDHFNSPHLIQNEGRLDDIVRSFTQLASQKFDAFVVQDLTNHLFQTPMFNFGLDLPSLNLQRGRDHGIATYNSMREVCGLPRARTFNDLTDQISPENVQKLARIYRNVDDIDFFAGGLTETPIPGSLLGWTFLCVVGDQFARLKLADRYFYDLGGQPGSFTEPQLQQIRLSSWARIMCDNANIAAVQPLAFMQTNSRFNQPAPCSGPIIPRPNWALWEGERPAA"
misc_feature 891..2507 /gene="LOC123746143" /note="Animal haem peroxidase; Region: An_peroxidase; pfam03098" /db_xref="CDD:460804" polyA_site 4418 /gene="LOC123746143" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tacatggtgcttggaggcgataatccagttcacaccagctgggggtaaggtctgaccactggagtcaagaggcagagttgaggcggacgttctgggctggaggagcggcagtggtgcagcggacaccgtcaaggcaggaagaccctctgaagtcatagtggcaagcgcagcacaagatgaggctgaggtcatggctgctggtggcggccctggggactctggtggcctccctgcaggctcaagaagactcgtctgatgtccctgaagagctgcacggcaccagagtggcccgtcaacttgcccggcgtcgacagagccgtcagcgctttcaagtaggaagaggaggactcgtcggggctgctgcaggaggcggcgggtgcgtctgtgtgcctctggtcgtctgcggttctcacatcgaccagctgcaacagtcttgcactacgagcggcggagctcccggggtctgctgcccgccatcttccttgactgctcctacacgctcggctcaggcgaccgccaggctcttccctggcgtcaataacgtcgtgaggttagacccgctcgaccccaccaggttcctggcgtcgttggatgcgggagtgaaaagtttcaatgatattagaagtgtcgagtcgaatctaatccgagacttggtgacgctgcctatcttctcccccgctggtcagcatctgcaattctttaccgtcgaggatgaaggtagagagatggaccgcagggccaccattatcgccctggtagctaggagcatagcaagggactttcagttaacaccacaacaggcagcctttggtctgaggaacttgcttgtgagcgacacaaagctgagagacttgtgcccacagaaccccaggtgcacccccaacagcaagtaccgtactgctgatggctcgtgcaacaacctggcgaacccaacctggggcatgagcaacactcccactcagaggatcttaccaccaacttacgacgatggtattcatggtgcacgctcgagatcagtcgacggctcgcctcttccaaatgttcgacaaattagcagcaacgtttttcttgatattaaccggccagatcagttttatacgaccatcttaatgcagtggggacagtttctcgaccatgattttgctcatgtaccatttcctacaatggagaatggaacgggtattcagtgttgtccaaatggaacaatggcacccaatcttcatcctcggtgtctacccatcgacaccacaggcgacgcattctatggccctcgaggcagcaggtgtatgaatttcgtcaggagtatgttggctgtcggtcccggccccggctgtaacttcggcttctcagagcagctgaaccaaataacacattggttagacgggtctgcagtgtacgggtccacccccaaccagcagcgggccgtcaggtccttcaggaacggtcttcttcgaacctcagggaacaacctcctgcccatcaaccccaaccagaacacctcaggaatctgtcaaggaatgcagcgaggagccctctgttacctggcaggtgactcacgagtgaaccaacatcctcacctcacaactatacaaattctgttcttgagggaacacaaccgcgtggcgagggagctccaggccctcaacccccagtggtcggacgaggccgtcttccaggagacccgcaggatcgtcgctgccatcatccagcacattacctacaacgagtttcttcccattgtcttgggaaacaattacatgaatacctacggcctcagtccgcgcctctatggctacagcaacaactacaaccccaacatcaaccccaacatgaacattgaattttccaccgctgcctaccggtttggtcactctgtggcgcagggaaccttgcgattgtttactgctaatggcggcgtggacaccgtccggctccgtgaccacttcaactctcctcatctcatccagaatgagggccgactggacgacattgttcgcagcttcactcaacttgcctctcagaagtttgacgccttcgtcgtccaggacctcacaaaccatctgttccagaccccgatgtttaacttcggcttggacctgcccagtctgaacctgcagcgcgggcgggaccacggcatcgccacctacaacagtatgcgggaggtctgcggtctacctcgggcccggaccttcaatgacctcacagaccagatcagccctgagaacgtacagaaactggcaagaatctacaggaacgttgatgacatagacttttttgcgggaggtctcacagagactccgattcccgggagtctcctgggctggaccttcctgtgtgtggtgggagaccagttcgctcgtctcaagttagctgaccgttacttctacgacctcggaggacagccaggctccttcactgaacctcagttgcagcagatccgtcttagctcctgggccaggatcatgtgtgacaacgccaacattgccgccgtccagccactcgccttcatgcagaccaacagcagatttaaccaacccgccccgtgcagcggtcccatcatcccgcgtcccaactgggccctgtgggagggagagaggcctgctgcctaactcatctgatgggttcatactgcagctcatctgatgggttctcaatccagctctaatggatcatcactccagctccttctgatgggttattctccatctctgattagtcattaatccagttcctctgataaatcatgactccagctctgatgggtccttactacagctctgatgggtccttactccagctgtggtgggtccttactccagctctgatgggtccttactccagctctgatgggtccttactacagctctgttggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatgggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatggggtcctaactcgagctctgatgggggtcaccactccagctctgatggggtcctaactcgagctctgatgggggtcaccactccagctctgatgggggtcaccactccagctctgatggggagtcaccactccagctctgatggggagtcaccactccagctctgatggggagtcaccactccagctctgatgggggggtcaccactccagctctgatggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatggggggggcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactccagctctgatgggggggtcaccactcccttgaacaagtttcatcatttctcttatagtttctgttgacggtgtttatgttgacgcccacagtaactcatcagtgttgaccacagtaactcatcactgttgacaaccacagtgactcatcagtgtttatgttgacgtccacagtaactcatcactgttgacgcccacagtaactcatcgctgttgacgatcacagtaactcatcagtgtttatgttgacgcccacagtaactcatcagtgttaccacagtaactcatcactgttgaccacagtaactcatcactgttgacaaccactgtgactcatcagtgtttatgttgacgccaatagtaactcatcagtgttgacgcccacagtaactcatcactgttgacgatcacagtaactcatcagtgttgaccacactaactcatcactgttgaccacagtaactcatcactattgacaaccacagtgactcatcagtgtttatgttgacgtccacagtaactcatcactgttgacgcccacagtaactcatcacagttga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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