2024-11-15 18:19:29, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_044333690 5180 bp mRNA linear VRT 15-OCT-2021 DEFINITION PREDICTED: Thunnus albacares centriolin (cntrl), mRNA. ACCESSION XM_044333690 VERSION XM_044333690.1 DBLINK BioProject: PRJNA769113 KEYWORDS RefSeq. SOURCE Thunnus albacares (yellowfin tuna) ORGANISM Thunnus albacares Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058107.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Thunnus albacares Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5180 /organism="Thunnus albacares" /mol_type="mRNA" /db_xref="taxon:8236" /chromosome="2" gene 1..5180 /gene="cntrl" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:122968450" CDS 82..4485 /gene="cntrl" /codon_start=1 /product="centriolin" /protein_id="XP_044189625.1" /db_xref="GeneID:122968450" /translation="
MSRKQSELEGRLDDMLTRIAMETQEIKELEQQLTDGQILANEALQRDLEGIISGLQEYLRSLREQARRAQQQVHSLQDENQSLQLHLQDAQRHCRQLQDTARTHTQNMSLQQEELSVLQMEAQALRDRQVESSRQQVELEAELQQLREELSRQLTLGKLERDALQAAVDNEKQSREIRESQLQSTIDTLQDDKSSLQQIVHKLQAQLDQTEDQLHQSRTQFKETRSQLEQLSAALLDEDRTRAEDKSSPEDTLSSSVEQLYRTVQQTRTSKEQVHNQNQQQIERLQAQLAQDQEHIAQLEAQLAWDQDLVTRGVEQDQELQRLRDKLQRYQSMNRHIQHKLEAELQQSRLQLQDVQQERDALLLQLRSQSDGHQKSLARLNRKLRQLSRFMCDSDQLTSEQLRSTSEQLRALNRTVELLHTQKTVDEHDDSSHQTEHTHTLEDEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHTLQDEHTHAVEELRAELAEAQQHASRLRQQLDQVRTRTRTRTRTRTRTRTRTRSRSRTRSRTRSRTRSRIRDGGQWCFIPPGHSAPSLGSQGTQDSGLGLQYLSSPERAQQQHRPPTGGGYWVYIPPAHTDSDTGAEWRDSGGGSDTDRSSRGGTPPPPPAPAAGVSEGPSDAQTPLAGPAWLLCGSPAAVVYSPPAGGAALHCNIPEHTHREGMCVCECERLREAERLEEEKKKLRLETKQLRHTLRRHRSVKLVCDEVECVEKTLLKRRAELRQADRLLLEAQSCIHTTRDQARSAQREADTLQHRAQDSATCLLEATQHVRELQEELEELRRRRQLEEQTLREMEEVLRSRDQKFQQLSTKTHSAADRLALVLSDCQEAQRRLDSVNSQVEQQEQRLLQRKEEHHAALSRLKEVRQEEQRLQDAVKELWEQQEVLLSERRSSVSAVNEEEQKLLTLQSELNTHRAELKRVLQELLAEQQALEEVKTKRTQTLQRLHKKKDELHRTKDELHRTKDELHRTKDELDRTKDELHRTKDELHRTKDELDRTKDELHRTKDELHRTKDELDGTKDELDGTKDELHRTKDELHRTKDELHRTKDELDGTKDELDRTKDELLMKQEELDRKRDLLDGIQDEVEKKKDELVNKQHKSDQKRHKLDKMQDEVERKREELAALQQEVDSHRKESESRLKNTKQQRTELQELQEELSRRREESSSLQEQCKHLEARRRHADRCLSATEAELAKQREEHSRAQLLKQEVIRDTAAAQEQLNENSELLSLLSEQLEQKKKQLQTVEQELNESSQQQRAEHIQHKQVSAGLDDVKAAACQLEDRGRRLNHQQLQLNQLSEQLWQREKQLLCEEERLIHMRAGLQREGEELIQTEEELQKKEKEEDSREVLKEEDESFYLSTAGLRSAFNTEEERWKVELQREKLRQQEDRLKARLRCSLWNQQENLEVRRLETEESLLGLKHRLDQLDSLLTHTETHTP"
misc_feature 223..>1194 /gene="cntrl" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature <913..>1605 /gene="cntrl" /note="Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; Region: COG4913" /db_xref="CDD:443941" misc_feature <2551..4299 /gene="cntrl" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" polyA_site 5180 /gene="cntrl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctactgacactggacatcacagacccacaacatgcccgtgtgacgtcccggttggccagtgtgagacagctgttggacaggatgagcaggaagcagagcgagctggagggtcgcctcgacgacatgctgacacgcatcgccatggagacacaggagatcaaagagctggagcaacagctgaccgacggtcagattttggctaatgaagctcttcagagggatttggagggaatcatttctggacttcaggagtatctgagatccctcagagagcaggctcgtcgagctcagcagcaggttcacagtctgcaggatgaaaaccagagtctgcagctccacctgcaggacgctcagagacactgcagacagctgcaggacacggccaggacacacacacagaacatgtccctccagcaggaggagctgtctgtgttgcagatggaggcccaggctctgagagacagacaggtggagagcagcagacagcaggtggagctggaggcggagctccagcagctgagggaggagctaagccggcagctcacactgggaaagttggagcgtgatgcgctgcaggcagctgtagacaacgagaaacagagcagagagatcagagagtctcagctacagtcaaccattgacacactgcaggatgacaaatcatctctccagcagattgttcacaaacttcaggctcaactggaccaaactgaagaccagttacaccagagcagaacccagtttaaagagaccaggagccagctggagcagctgtcagctgccttgttggacgaggacagaaccagagcagaggacaagtccagtcctgaggacacgttgtccagcagtgtggaacagctctacaggaccgtccagcagaccaggactagcaaggagcaggtccacaaccaaaaccagcagcagatagaaagactgcaggcccagctggcccaggaccaggagcacatagcccagctggaagcccagctggcctgggaccaggacctggtgacccgcggcgtggagcaggatcaggagctgcagaggctccgagacaaactgcagagatatcagagcatgaacagacacatccaacacaaactggaggcggagctacagcagagccgtctgcagcttcaggacgtccagcaagagagagacgctctgctcctgcagctgcgttcacagagcgacggtcaccagaagagcctcgcacgtctgaacaggaaactacggcaactcagcaggttcatgtgcgactctgatcagctgacaagcgaacagctgagatcaacctccgaacagctgagagctctgaaccgcactgtggagctgctgcacacacagaaaactgtggatgagcacgacgacagctctcaccaaactgaacacacacacactctggaggatgaacacacacacactctgcaggacgaacacacacacactctgcaggatgaacacacacacactctgcaggatgaacacacacacactctgcaggacgaacacacacacactctgcaggatgaacacacacacgcagtggaggagctgagagcagagctggctgaagctcagcaacatgcaagcagactgagacagcagctggaccaggtcaggaccaggaccaggaccaggaccaggaccaggaccaggaccaggaccaggaccaggagcaggagcaggaccaggagcaggaccaggagcaggaccaggagcaggatcagagatggaggccagtggtgcttcatccctcctggacacagtgctcccagtctgggctctcaggggactcaggactctggtttggggctgcagtacctcagttctcctgagagggcacaacagcagcacagacctcctacaggaggcgggtactgggtctacatccccccggcacacaccgactctgacacaggagcagagtggagggacagcggaggaggcagtgatactgaccgcagctccagaggagggactcctcctcctcctcctgccccagctgcaggtgtctctgaggggccctctgacgctcagactcccctggctggacccgcctggctgctctgtggttcacctgcagctgttgtctacagtcctcctgcggggggcgccgcactgcactgtaacatccctgaacacacacacagggaaggcatgtgtgtgtgtgaatgtgagaggctcagagaggcagagcgactggaggaagagaagaagaaactacgactggaaaccaaacaactacgacacacactgagacgacacaggagtgtgaagctggtgtgtgatgaggtggagtgtgtagagaaaactctgctgaagagacgagccgaactccgtcaggctgacagactgctgctggaggctcagagctgcatacacaccaccagagaccaggccagatcagcccagcgggaggcggacaccttgcagcacagagctcaggacagcgccacctgtctgctggaagccacgcagcacgtcagagagctgcaggaggagctggaggagctgaggaggaggaggcagctggaggagcagactctgagggagatggaggaggtgctgaggagcagagatcagaagttccaacaactcagcacgaaaacacactcagctgcagacagactggctctcgtgctgtcggactgtcaggaggctcagaggcgtctggactcggtgaacagtcaggtggagcagcaggagcagaggctgcttcagaggaaggaggagcatcacgccgctctgagcagactgaaggaggtcagacaggaggagcagcgactgcaggacgccgtcaaggagctgtgggagcagcaggaggtgctgttgagtgagaggaggtcttcagtctctgctgtgaacgaggaggagcagaaactcctcacgctgcagtctgagctcaacacccacagagcagagctgaaacgggtccttcaggagctgcttgcagagcagcaggctttggaggaagtgaaaaccaaacgcacccagactctccagcggctccacaagaagaaagacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctggacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctggacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctggacggaaccaaggacgagctggacggaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctgcacagaaccaaggacgagctggatggaaccaaggacgagctggacagaaccaaggacgagctgctcatgaagcaagaagagttggacaggaagcgggatttgttggacgggatacaggacgaggtggagaagaagaaggacgagctggtgaacaagcagcacaagtcggaccagaagagacacaaactggacaaaatgcaggatgaagtggagcggaagagggaggagctggctgcgctgcaacaggaagttgattcccacagaaaagagtcagagtcacgtctcaaaaatactaaacagcagcgaacagaactgcaggagctgcaggaggagctgagcaggaggagggaggagagcagcagcctgcaggagcagtgtaaacacctggaggccagacggaggcacgccgacaggtgtctgtcagcgacggaggcggagcttgctaaacagagggaggagcatagccgcgcccagctccttaaacaggaagtgatccgagatacagcagccgctcaggagcagcttaatgagaactcggagctgctgtcgctgctcagtgaacagctggagcagaagaagaagcagctgcagactgttgaacaggagctgaacgagtccagtcagcagcagagagcagaacacatccaacacaaacaggtgtctgctgggttggatgatgttaaagctgcagcgtgtcagctggaggacagggggcgccgtctgaaccaccagcagctgcagctcaaccagctcagtgagcagctgtggcagagagagaaacagctgctttgtgaggaggagaggctcatccacatgagggcggggctacagcgggaaggggaggagctaattcagacagaggaggagctccagaagaaagagaaggaggaggacagcagggaggtgttaaaggaggaggacgagtctttctatctgtctacagctggtctgagatcagctttcaacactgaggaggagaggtggaaggttgagttgcaaagagaaaaactgagacaacaagaagaccgactaaaggctcgtcttcgctgcagtttgtggaaccagcaggagaatctggaggtgagacgactggagacggaggagagtttactgggactgaaacacagactggaccagctggactcactgctcacacacactgaaacacacactccctaacacacacacacacacacacacagcaaacattcagtaacccgtctgtctgactttaacagagaaacatatgcagctcaaactgacgtaactttatgaatctagagtcacgcagcagccgatgaaactcacacaatgttttcaaaacctcacacatccttcttctcctgttcacacacgactaaacatgaagagatactgtcgtccttctcaagttcagctgcagataatacgagtcctcatcagtctgagttacactaatcaagtctgtttagttccaaaaaaaataaatctcttcacagcggattatgcaacaggaggaaagaacttgtgcacagtctcacttattgtttactagttcagtctgtccgaccttcatcagctgcttcattaaaagatacaaatatgaacccaaactgcaataaaccatgaagatgatcctttacagctttgtggattaatctgctggttatgttcttgatgactttattaatcatttgtactttgacatgttggagccttcatagtgtttcagtgatgatgtttaatcagctggaaccagtcgatgcagctcttcagtgtggaaacactgagctgaacatctgaatgaaatcatgtgtttcaaggtttgtttgtaaaaaaacatgtaaaaactgatatttatctttgaattaaacactctgaacatgttaaagctc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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