2024-11-15 18:56:21, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_033393191 1954 bp mRNA linear INV 14-APR-2020 DEFINITION PREDICTED: Drosophila miranda trichohyalin-like (LOC108161194), mRNA. ACCESSION XM_033393191 VERSION XM_033393191.1 DBLINK BioProject: PRJNA623594 KEYWORDS RefSeq. SOURCE Drosophila miranda ORGANISM Drosophila miranda Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila miranda Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1954 /organism="Drosophila miranda" /mol_type="mRNA" /strain="MSH22" /db_xref="taxon:7229" /chromosome="4" /sex="male" /tissue_type="Whole body" gene 1..1954 /gene="LOC108161194" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns" /db_xref="GeneID:108161194" CDS 58..1794 /gene="LOC108161194" /codon_start=1 /product="trichohyalin-like" /protein_id="XP_033249082.1" /db_xref="GeneID:108161194" /translation="
MLNIFIIVLVFFNLSENLTRGSDFHENQESCFVSRELEDQCAAVCYPTVKPLLKYMGICHQKDLQISGMQNQLQDQNEEVTKYKTQVEILNKQLVDKRSSSGLKNDLKETIDKVQNLRLELSEELKKLYRQKNNTVKDLHEEIANVKMQLKSKDELLEQNEKTMIEKDELLKQKEKNMEEKDELLKKKEKNMEEKDGLLKKKDSTLKNLQEEIANVKMQLTRKDELLKENEKTMTEKDELLKQKEKNMEEKDEILKHKDSPMKDLHEEIANVKIQLTRKDELLDQKEKTMIEKDELLKQMEKNMEEKDEMLKQKEKKMEENDELLKQKEKNMEEKDEMLKQKEKNMEEKDEMLKQKEKKMEENDELLKQKEKNRDEKDELLKKKDSTMKDLHEEIANVKIQLRSKDEFLEQKEQKKEQFIRPILDNADPKTSETHTIDVPLKEPDESGWTIILQELEGLASLEKKLAQYKEKPFNNGNDSFFIGRKNLYFMTLATPHEILIQVKFVDGRSSSVQDIRFKMGNAKKDYTLRSVNDNLPNRKYSITEMKALIAIQVLMKRKMPFSSRDWKQLTIKFREIQ"
misc_feature <391..1284 /gene="LOC108161194" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 1345..>1647 /gene="LOC108161194" /note="Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085" /db_xref="CDD:412152" misc_feature 1639..1641 /gene="LOC108161194" /note="gamma-gamma dimer interface [polypeptide binding]; other site" /db_xref="CDD:238040" ORIGIN
gcgaattcagttggtattctgttgtgttcgagaaatatcaaggtatattcccagaatatgttgaatatttttattattgtgttggttttctttaatttgtcggagaatttgacacgtggttcagatttccatgaaaaccaagagtcgtgttttgtatcaagagaactggaagatcaatgcgctgccgtttgttatcccaccgtcaagccgttgcttaaatacatgggaatatgccatcagaaggatctacaaataagtggaatgcagaaccaacttcaagaccaaaatgaggaggttaccaaatacaaaactcaagtagaaattctcaataaacagttggtagataagcgaagttcttctggcctcaagaatgacctaaaagaaaccatcgataaggtgcagaacctcagattggagctcagtgaagagttgaaaaagttatacagacagaaaaacaataccgtgaaggatctgcacgaagaaatcgcgaatgtgaaaatgcagctgaagagcaaggatgaacttttagaacaaaacgagaaaacaatgatagaaaaggatgaactattaaaacaaaaggagaaaaatatggaagaaaaggatgaactattaaaaaagaaggagaaaaatatggaagaaaaggatggactactaaaaaagaaggatagtaccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgacgagaaaggatgaacttttaaaagaaaacgagaaaacaatgacagaaaaggatgaactattaaaacaaaaggagaaaaatatggaagaaaaggatgaaatattaaaacataaggatagtcccatgaaggatctgcacgaagaaatcgcgaatgtgaagatacaactgacgagaaaggatgaacttttagaccaaaaggagaaaacaatgatagaaaaggatgaactattaaaacagatggagaaaaatatggaagaaaaggatgaaatgttaaaacaaaaagagaaaaagatggaagaaaacgatgaactattaaaacagaaggagaaaaatatggaagaaaaggatgaaatgttaaaacaaaaggagaaaaatatggaagaaaaggatgaaatgttaaaacaaaaggagaaaaagatggaagaaaacgatgaactattaaaacagaaggagaaaaatagggatgaaaaggatgaactattaaaaaagaaggatagtaccatgaaggatctgcacgaagaaatcgcgaatgtgaagatacaactgaggagcaaggatgaatttttagagcaaaaggagcaaaaaaaggagcagtttattaggccaattttggataatgcagacccaaaaaccagcgagactcatacaatcgatgttcctttgaaagaaccagacgaaagtggttggacaattattttgcaagaacttgagggattggctagtctagaaaagaagctagctcaatataaagaaaagccgttcaacaatggaaatgattcatttttcatcggccgcaagaatctgtatttcatgacactggccacgccacacgaaattcttatccaagtgaaatttgtggatggcagaagttcttcggttcaagacattcgcttcaaaatgggcaacgcaaaaaaagactacacactgaggtcggtcaatgataatttaccaaacagaaagtactccattaccgaaatgaaagcgcttatagcgattcaggttcttatgaaacgaaaaatgccattcagttctagggactggaagcaattgaccattaagttcagagagatccaataatagaagaagaaaccattatgcgcccttgatagagaagtatttttatgtatttaaatacatttttaaattcttcggtaatcgatgatgctaccgtgaactaacgtaaaaaaaaatagtttaaaaaataaaagttaatgctggtttttctgttattttctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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