2024-11-15 13:18:28, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_027276679 2534 bp mRNA linear VRT 05-DEC-2018 DEFINITION PREDICTED: Larimichthys crocea 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (LOC104939523), transcript variant X1, mRNA. ACCESSION XM_027276679 VERSION XM_027276679.1 DBLINK BioProject: PRJNA354443 KEYWORDS RefSeq. SOURCE Larimichthys crocea (large yellow croaker) ORGANISM Larimichthys crocea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020856961.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Larimichthys crocea Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2534 /organism="Larimichthys crocea" /mol_type="mRNA" /isolate="SSNF" /db_xref="taxon:215358" /chromosome="Unknown" /tissue_type="blood" /geo_loc_name="China: Southeast region" /collection_date="Aug-2011" gene 1..2534 /gene="LOC104939523" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:104939523" CDS 775..1620 /gene="LOC104939523" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase 2 isoform X1" /protein_id="XP_027132480.1" /db_xref="GeneID:104939523" /translation="
MECRTTVVSYLSWILIGGGMAYLLHQKRNHARYGRYVTVDPRCCSARLGWFLQELPAFLLPLLLLFTEESSGQWTRRMVLLCTFMLHYFHRSIIYAFLTRGRPVPLPIVFYAAIFCSLNGFLQGHHLLHCARPEDLRLTDTHTAAGLVLFVVGMSINIHSDHILRSLRKPGETVYRIPHGTTPEPDPHHTLIHPRTSTCIIVGGGLCFSGGMFEFVSGANFFGEIVEWCGYAVATWSLPTFAFAFFTICSIGPRACHHHRDYQQRFEDYPRSRKALIPFIL"
misc_feature 1078..1617 /gene="LOC104939523" /note="3-oxo-5-alpha-steroid 4-dehydrogenase; Region: Steroid_dh; pfam02544" /db_xref="CDD:460585" ORIGIN
ctgtctctctctctgtctctctctgtctgtctctctctgtctgtctgtctgtctctgtctctgtctgtctgtctctgtctctgtctccatctgtacactaaggtggaatagttacaagctttggacccaaacagaaccttgtcgtgtccatggttacagggtgcagcgttctgtcagcagatgttttcagcacggacctatgaggagctgcacacagctctctgcattgtctcactgtgacaagttggcactagctgcagttccaatcgtgaacagctgatcggtggagctttgctgatctggaggatcagctgtggagaaaaactgactgcaactttggaatcagcagaaaattctaactctgtttcaactgtttcaagtgttccccggtgtaatcagagggaagttacaatatttgatttaaagcaacctgctcgactcgtttctgcggtgacaccgtctgactcactgcatctgaacacggtgaagtaacttcctcttcctccttctgtcgctctgctgcttcagacccgggaacagtctacagacccgggaacagtctacagacccgggaacagtctacagacccgggaacagtctacagctgctgcagactgtctaaaacctggacgtagtctctgtgacgtccccgcagactgtctaaaacctggacgtagtctctgtgacgtcctcgcagactgtctaaacctggacgtagtctctgtgacatctcaggtactggttcttatttgtcgtacagggtgaagtggactgatggagtgccggaccacagtcgtttcttacctgagctggattctgattggtgggggcatggcctacctgctgcaccagaagcggaaccacgcacgttatggtcgctacgtgacggtggatcctcgctgctgttcggccagactgggctggttcctgcaggagctaccggccttcctgctgccgctgctgctgctgttcacagaggagtcgagcggacagtggaccaggaggatggtgctgctctgcaccttcatgctgcactacttccacaggagcatcatctacgccttcctgacccgaggacgacccgtcccgctgcccatcgtcttctacgccgccatcttctgctcgctcaacggcttcctgcagggccaccacctgctgcactgcgcccgccccgaggacctgcggctgacggacactcacacggctgcaggtcttgttctgtttgtggtcgggatgagcatcaacatccacagtgatcacatcctgcgcagtctgaggaaacctggagagaccgtctacaggatcccccacggtaccacaccagaaccggatccacaccacaccctgatccaccccagaacctccacgtgtataattgttggcggtggtctttgtttttcagggggaatgtttgagtttgtttctggagcgaacttcttcggggagatcgtggagtggtgtggttatgctgtagctacctggtctttacccaccttcgccttcgccttcttcaccatctgctccatcgggcctagagcctgccaccaccacagagactaccagcagaggtttgaggactaccctcgctccaggaaagctctcattcctttcatactgtgaccatgaagagtgtctgctgcatgtattagcattagcataatctatgatagctgacatgacctctaataactttaacatctaacattagctctgaaagctaacattagctctgaaagctaacattagctctgatgactaacattagctctgaaagctaacattacctctgatagctaacattagctctgatgactaacattagctttgatgactaacattagctctgaaagctaacattagctctgatagctaacattagctctgatgactaacattagctctgatagttaacgttagctctgaaagctaacgttagctctgaaagctaacattagctctaatgactaacattagctctgatagttaacattagctctgttgaataacattagctccgaaagctaacattagctccgatagttaacattagctctgaaagctaacattagctctgatagctaacattagctctgatgactaacattagctctgaaagctaacattagctccgatagttaacattagctctgatagctaacaatagctctgaaagctaacattagctctgatagctaacattagctccgatagttaacattagctccgatagctaacattagctctgatagctaacaatagctctgaaagctaacattagctctgatagctaacattagctccgatagttaacattagctccgaaagctaacattagctctgatagctaacattagctctgatagctaacaatagctctgaaagctaacattagctcatgttaatgccaacagacctcacctcatgacgttttccatcgaggttatgaaaggtgtttaggaaaggtggttatgaaaggtgtttaggaaaggtggttaggaaaggtgtttaggaaaggtggttaggaaaggtgttta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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