LOCUS       XM_023538993            7617 bp    mRNA    linear   MAM 05-APR-2024
DEFINITION  PREDICTED: Loxodonta africana ClpB family mitochondrial
            disaggregase (CLPB), transcript variant X2, mRNA.
ACCESSION   XM_023538993
VERSION     XM_023538993.2
DBLINK      BioProject: PRJNA1092696
KEYWORDS    RefSeq.
SOURCE      Loxodonta africana (African savanna elephant)
  ORGANISM  Loxodonta africana
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae;
            Loxodonta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_087348) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2024 this sequence version replaced XM_023538993.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030014295.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/02/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7617
                     /organism="Loxodonta africana"
                     /mol_type="mRNA"
                     /isolate="mLoxAfr1"
                     /db_xref="taxon:9785"
                     /chromosome="7"
                     /sex="male"
                     /cell_line="Cultured endothelial cells from umbilical
                     cord; passage 7"
                     /tissue_type="Original tissue source of cells is from
                     umbilical cord"
                     /dev_stage="juvenile"
                     /geo_loc_name="USA: Louisville Zoo, Kentucky"
                     /lat_lon="38.2057 N 85.7071 W"
                     /collection_date="2022-02-22"
                     /collected_by="Austin Bow"
     gene            1..7617
                     /gene="CLPB"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:100673715"
     CDS             17..2314
                     /gene="CLPB"
                     /codon_start=1
                     /product="mitochondrial disaggregase isoform X2"
                     /protein_id="XP_023394761.2"
                     /db_xref="GeneID:100673715"
                     /translation="

MSFLCSSAAESSRAVDYHSREVVRSSSRSRRLRTRRGSHVERGRHRGRHQGVVGQAAVMMVGCLALRTALAPRLLIRLLRSPSLRSHGGASGRNVTTGDRGELQWLRAAAGGRPGTAPALLAGRGASTGRHLGGRAETQCFATATWGRLPSLEETLPGQDGWTGVPNRAGLGIWALATALVVHCYSKNPSNKDAALMEAARTNNVQEVSRLLSEGADVNARHKLGWTALMVAAISRNYSVVQVLLAAGADPNLGDDFSSVYKTSKEQGIHSLEDKGQDGACWRITNQWTSALAFRRWLGVPTGVLVTREDDFNNRLNNRASFKGCTALHYAVLADDYRTVKELLDGGANPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQENAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALELSHNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLFKSPELPSPQAEKRPPKLRLEIIDKDSKTHKLDIRAPLHPEKVCYTL"

     polyA_site      7617
                     /gene="CLPB"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cacagccttctgggatatgtcgtttctttgttcttcagctgcagaaagttctagggctgtggactaccactcccgtgaggtagtgcgcagttcatcccgttcgcggcgtcttcgaacgcgccgcggcagccatgttgaacgtggccggcacaggggccggcaccagggggttgtaggacaagcagctgtcatgatggtggggtgcctggcgttgagaacagcgctggcgccgcggctcctcatccgactgcttaggtctccatcgctccggagccatggaggcgcctccggccggaacgtaaccaccggggaccgcggggagctgcagtggctgagggcagccgccggggggcgccctgggacagcgccggccttgcttgcgggacgaggggcatccaccgggagacacctgggaggacgtgcagagacccagtgctttgcgaccgccacgtggggtcgccttcccagccttgaagaaacactccctggacaagacggctggaccggggtccccaacagagctggactgggcatttgggccctggccacggcgctggtggttcattgctacagcaagaacccgtccaacaaggatgcagccctgatggaagctgctcgcaccaacaatgtccaagaagtcagcaggttattgtcagaaggtgcagatgtcaatgcaaggcacaaacttggctggacagctctcatggtggcagccatcagccgaaactacagtgtggtgcaggtcctgcttgccgctggggctgacccaaaccttggagatgatttcagtagtgtttacaagacctccaaagagcaaggaatccattctttggaagataagggacaagacggtgcatgctggcgcatcactaaccagtggacaagtgccctggcgttcaggaggtggctaggagtccccactggcgtcctggtcactcgagaggatgacttcaacaaccggctaaacaatcgagccagcttcaagggctgcacagctctgcactacgcggtccttgccgacgactaccgcactgtgaaggagctgcttgatggaggagccaatcccttgcagaggaatgaaatgggacacacacccttggattatgcccgagaaggggaggtgatgaagcttctgaggacttctgaggccaagtaccaggagaagcagcggaagcgtgaggctgaggaacgacgccgcttccctctggagcagcggctgaaagaacacatcattggccaggagaatgccatagccacagtgggtgccgcgatccggaggaaggagaatggctggtacgacgaagaacaccctctggtcttcctcttcttgggatcatctggaataggaaaaacagagctggccaagcagacagccaaatatatgcacaaagatgccaaaaagggcttcatcaggctggacatgtctgagttccaggagcgacatgaggtagccaagtttatcgggtccccaccaggctacatcggccatgaggagggtggccaactgaccaagaagctgaagcagtgccccaatgctgtggtgctctttgatgaggtggacaaggcccatccagatgtgctcaccatcatgctgcagctgtttgatgagggccggctgacagatggaaaagggaagaccattgactgcaaggatgctatcttcatcatgacctcaaacgtggccagtgacgaaattgcacagcatgcgctgcagctgaggcaggaagctttggagctgagccataaccgtattgccgagaaccttggggatgtccagattagtgacaagatcaccatctcaaagaacttcaaggagaatgtgattcgccctatcctaaaggctcacttccgaagggatgaatttctgggacgaatcaatgaaatcgtctacttcctccccttctgccactcggagctcatccaactagtcaacaaggaactgaacttctgggcaaagagagccaagcagaggcacaacatcacactgctctgggaccgcgaggtggcagacgtgttggtcgacggctacaacgtgcactacggcgcccgctcaatcaagcatgaggtagagcgccgtgtggtgaaccagctggcggcagcctatgagcaggacctgctgccaggtggctgtactctgcgtatcactgtggaggactcagacaaacagcttttcaagagccccgaactgccctcaccccaggctgagaagcgtccacccaagctacggctggagatcattgataaggacagcaagacccacaaactggacatccgggcaccactacaccccgagaaggtgtgctatacactctagcatctacctacccacctacacgtgccctcaacatccaataaaggccccttggctgtggcatggcaactgacctatcttcccctcatgcctttttctcctcgctacccagcctaaggcctgcttacctcctcacagcccctggaagacccctcctcagccccaaagtcttgagcaagaatcttgacctactctggcccctttgttttgggcccataatctgctaaccaggctctagaagaggagctgcccctacactgccttcaaggcaggcaggggaatccctcaactctatccttcagcatgatccccatgtcccacggtctctggaactttatcatgtacccaggaaactcagaagtatggcagctaaaaatagatatgactggaagaagacaggaaccaggctgtgacctgcctatcctctgttggccttcatgcagctcagtcctcataatgtctccatgaggactggggaaggagtgtagagaggcccaggcatagatggctctttcccatgctccaaaattccaaggaaaaagaggtccattgagcccttccctccttctaccaccatatcatacctactatccctccccgccccatgtcctggggttaggccagaccatgtttctctagccttagaactaggccagtataggacatctctaggacgggagactgactggttcattaccacacccccacaactctgagactagacagcagtcccaaacaagcaagctcagctctacagggccctccttaggggactaacagcattgacactgggaagctgtaggggaagaagatcatggggttgggctctacccagatggccatggtatctgctccagccctgtctataatgctgttcagccctggttagcctggtataaacatctaccccatgcactatttatgttgtcactaaggagaaggtctggacactatcccctgagggcattccacagaccagccatgtttcacccccagcccagcagggcacagcaaggcctggtgcatcctcaggccccatctgcagcacccactactgatgaccacccatctcccctcctagcgcaaggccttcttggaacctcctttagttgttagctaatctctttcaagaggcagaaatgggggcaggaatccaatacctttgggcagtgagagtatatcataacagtacggtgggcatgaggcagtcagtccagggcatggcctccagcagttgccccagcagtcactttctaacccctcaaggatttgcgtccgctgctccctacctcaatgactgccaatctgtttagttttagttttgttttgtttattgtggtaaatatatatgtaacagaacatttgtcatttcagcattttttacatgtacagttcagtaacattaattacgttcatcatgttgttcatcccatcaccactgtttccagatttttccatcacccttaaagaagctcaatgtccatatacgagtctccccttttttttaacttttgttttgaaataattttagacttagagaaagttgcaaaaatagtagagtattcccgtatacccttcacccaacttccttaatgttaacatctcatatagccatactgtcattatcagaaccaggagattaacattaattcagtattactatctacagaccttattcaaatgttgccagctttcccactgatgatgccctttttctggtccaggatccagcccaggattccacattgcattttgctgtcatgcttcttacatctctttgtttgtgagagttttcattcagtcttctgcctttcatgaccttgacacttgtaagttcatgaatttgagaatggtacttttgaagagtccaggccagctgtgtctctcaatttgggtttatctaatgatttcacatgatcagattaaggctatgcatttttgacaagactatcatagaggtgatatgcccttctcaatgcctcatataggagataatgtttactttgatcatatggctgaggtggtgtgtgccaggtttctccactataatgttacttatttgtcctttgaaagtagtaagaatcttgtggggagatactttgaaattatgcagctctcttctacttagaatttcgtccactgatgttagcatccatcagtggttcttgctcacaataagtattaatgttgtatctacctaatgatgattttccgtttcccttatgccttctatatttaataattcatagtctaagtatagtgcaatggttaagtgctcggctgctaaccgaaaggttggtggttcgaatctacccagcagctacatgggagaaagacctagctatctgcttccataaagattactgcttaggaaaccccgtggggcagttctactctgtcacattgggtcgctgtgagtcagaattgactgaacagcacctgacaacaacaacagtcccggaaagagttattagaccccatttatttattcaataatttatccatatcagtatggactcatggatatttgttattctatagattataatctaaacagtttattttgttgctcaaattatcccagatttggcctttgagaactctttcaggttggctcctgtcttttcagcattgctcccatcatcttttgagcacttctttactttctgcaccacaacatgttccacgctcaccttgtaattcccatttctccaagcagcccctggttccttttatttaagattggtacttagaaactaagatctgggcactagatgtactcattgttactagggttattgcttctaggccctctcagcagacacagctaggaaatgtatgtcgttaacacacacatgtacacacatctgaatgttattgaatatctatccatctgtatatttattaaaaaccatgagttcatattgatactttcagttctaatccaataccagagggttcatgattgtcatacttatgactttactattctttctctacttcttttgctcctgctatctccatttcttctcctttatctccatttggtgttgagacctcccttagagcctctaattcagtcagtcagtcaccatcctatatggaacattcctactggacaaagttcttaactgcctggctgccagacccttggttcagtcaaccatggccaggagcagcaggcatataactccaaaccagataacttttattacaggaaaacccagtggccaccttcctgagaagagagggtaggtggcatggtagaccctcagattctgaggaatttaagtatcgattcttcctgggattccttgccagacctcccaggtgatgttgggcccatatgttgtacttccatagcaccataggcaatactcaactcacttccattacttgtaccatgtctgtcttcataactagaatggaagctccaagaggacagatacccaactgttcagctcactgttctattcatagaacctggcacagtgccagtacatgatggctgcttaagaaatatttggactgatgggtgggtgggctcagcagcaagcacagatcttcacagtgggccttgggacagagcagtatcattcattcactcagcacatgtttatctggcatgcacttgtagccaagcagtggggctaccttccaggactggatccttgacccaaaggggcaagatgagacccagataccttattgaggatcatggaatgaatgaggttggacttggaaatgaacatgcaatgcctttattgtacaaaaagaaaaactcagaggtgtgtagtcattgtatagattgtgatggtaacatttaaaccattagaaaatggatccaataaagataaaagcttgagttagtaaaagaaaaaacaaaccaaaagggataaagagatgattgtgtgaaagcaccaataaaatagataaaatatcctgagcatgataaagggaaaaggagcaaaaaatacaagattagaaatgagaaattaggcataaccatatatatggaagaattggaaataattttaagaactctatagcaacaaatttgaaaagagcaaattttctagtgaacactgactcaagaaatagaaagtttggctagccaaatagaaagtttgcttactaaagaagaaattgggaagatgaataaaaatgtatcattttaaaagactgttcaagtttttattgaaatatacatagggaaaagtacataaatcacaaacagtttaatacataccacaaagtgaacacacccctgtagccaccacccccgcaagaaatagatgtgttctaacttttaactactgcataaactatttcagaccatgggaaaaaatggaaagctgtccaattgatttttaaaaaccaatgtaagattaatattcaaacctgataaagtgccaaaaagaatgccatagcctagtcttatttctcactatcccaataaaatcaggctgaattgtacaccaagatcacacaaagtttatttcagccatacaaggcacagtatcaggaaatctactagtacaacccaccacatgaagggcttaaaggttatttgaatgttgacagacttcataatagtatcaatgtcagttttcttattttgataactatgctgtgattatttaagaatattcttgctttcagaaaatgtatgttgcagtatttagagtttaaaggtaaaggcaatttgtaaatgtttcagcaaattttacgctacgtatatatacacagaaaatgaaaaaacaaaagtaaagtgttaacatttaggaaatttgaatgaagggtacataagaattctttggattatttttgcaacttttttgtttaaaattatttcaaattaaacttttttttaaggaagaaaaaaaatgttatatcaatacatcctgaaagggcatttgataaaattttgcagctttaagtacaatttgataaaattcaagctgtaagtaaaacaagaaaaaaactatttgaatgtgatagcccatcaaaaacagtagcagacatcattttttattgtaaacctaaagtcatttcaattaaaatctgaaggagattggatacctgctaacacctttattattcaacattgctttgaaggttcaggtgaaagcatttagacaagaaaactaaataaccaatttaaatactggaaaataataaattatcttgttttgctgatatattactgatgtctaggatatccaagaggctactgtaaaaacctgttagcattagtttaaaaatgtggcaagtgactgaataaaagataaatgtatacaaatcaa

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