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2025-04-23 19:57:06, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_021675089            5638 bp    mRNA    linear   PRI 10-APR-2024
DEFINITION  PREDICTED: Aotus nancymaae ClpB family mitochondrial disaggregase
            (CLPB), mRNA.
ACCESSION   XM_021675089
VERSION     XM_021675089.2
DBLINK      BioProject: PRJNA1095488
KEYWORDS    RefSeq.
SOURCE      Aotus nancymaae (Ma's night monkey)
  ORGANISM  Aotus nancymaae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Aotidae; Aotus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026988473) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 10, 2024 this sequence version replaced XM_021675089.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030222135.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5638
                     /organism="Aotus nancymaae"
                     /mol_type="mRNA"
                     /isolate="86718"
                     /db_xref="taxon:37293"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
     gene            1..5638
                     /gene="CLPB"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 Proteins"
                     /db_xref="GeneID:105720389"
     CDS             45..2078
                     /gene="CLPB"
                     /codon_start=1
                     /product="mitochondrial disaggregase"
                     /protein_id="XP_021530764.2"
                     /db_xref="GeneID:105720389"
                     /translation="
MLGSLVLKRKAPAPRLLLRLLRSPVLWDHGGAFGRNVTTGGLGEPQWLRAAAGGRPGTSPALLSGRGAATAGRHGGRFDTKCLAAAIWGRLPGPEETLPGQDSWTEVLNRAGLGMWALATALVVHCYNKSPSNKDAALMEAARANNPQEVSRLLSEGADVNARHRLGWTALMVAAINRNDSVIQVLLAAGADPNLGDDFSSIYKTAKEQGIHSLEVLVTREDDFNNRLNNRASFKGCTALHYAVLADDYRTVKELLDGGANPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLRQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAEKRLPKLRLELIDKDSKTRKLDIRAPLHPEKVCNII"
     polyA_site      5638
                     /gene="CLPB"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
agcacaggggccggcaccacggggttatcgaagcaggtgtcacgatgctgggatccctggtgttgaagagaaaagcaccggcgccacggctactcctccggctactcaggtccccagtgctctgggaccatggaggtgctttcggccggaatgtgaccactgggggtctcggggagcctcagtggctgagggcagccgccggggggcgccctggaacatcgccggccttgttgtccggacgcggggcagccactgcggggcgccatggaggacgcttcgataccaaatgcctcgcggctgccatttggggacgccttcctggccccgaagaaacactcccaggacaggacagctggaccgaggtcctcaacagggccggactgggcatgtgggccctggccacagcgctggtggttcattgctacaacaagagtccgtccaacaaggatgcagccctgatggaagctgcccgtgccaacaatccgcaagaagtcagcagactgctgtcagaaggcgcagatgtcaatgcaaggcacagacttggctggacagcactcatggtggcagccatcaaccgaaatgacagtgtgatacaggtcctgcttgccgccggggctgatccaaaccttggagacgatttcagcagtatttacaagactgccaaggaacagggaatccattctttggaagtcctggtcacccgagaggatgacttcaacaacaggctgaacaaccgtgccagcttcaagggctgcacagccctacactacgctgtccttgctgatgactaccgcactgtcaaggagctgcttgatggaggagccaaccccctgcagaggaatgaaatgggacacacacccttggattatgcccgagaaggggaagtgatgaaacttctgaggacttctgaagccaaataccaagagaagcagcgaaagcgtgaggctgaggagcggcgccgcttcccactggaacagcgactgaaggagcacatcattggccaggagagcgccatcgccacagtgggtgctgcgatccggaggaaggagaatggctggtacgatgaagaacacccgctggtcttcctcttcttgggatcatctggaataggaaaaacagaactggccaagcagacagccaaatatatgcacaaagatgctaaaaagggcttcatcaggctggacatgtccgagttccaggagcgacacgaggtggccaagtttatcgggtccccaccaggctacgtcggccatgaggagggtggccagctgaccaagaagttgaggcagtgccccaatgccgtggtgctctttgatgaagtagacaaggcccatccagatgtgctcaccatcatgctgcagctgtttgatgagggccgactgacagatggaaaagggaagaccattgattgcaaggacgccatcttcatcatgacctccaatgtggccagcgatgagatcgcacagcacgcactgcagctgaggcaggaagctttggagatgagccgtaaccgtattgccgaaaacctgggagatgtccagataagtgacaagatcaccatctcaaagaacttcaaagagaatgtgattcgccctatcctgaaagctcacttccggagggatgagtttctgggacggatcaatgagatcgtctacttcctccccttctgccactcagagctcattcaactcgtcaacaaggaactaaacttctgggccaagagagccaagcaaagacacaacatcacgctgctctgggaccgcgaggtagcagacgtgctggtcgacggctacaatgtgcactatggcgcccgctccatcaaacatgaggtagagcgccgtgtggtgaaccagctggcagcagcctatgagcaggacctgctaccagggggctgcactctgcgcatcacagtggaggactcagacaagcagctactcaagagcccagaactgccctcaccccaggctgagaagcgcctccccaagctgcggctggagctcatcgacaaggacagcaagactcgcaaactggacatccgggcaccactgcaccctgaaaaggtgtgcaacatcatctagcagccacctgcctgcctatatgcaccctcaccatccaataaaagcccctcggctgtggcatggtgactcacctatcttcccctcatgcctttcccgtctctacccagcctaaggcctgcttacctcctaacagcccctaaagacccctcctcagccccaaaacctgaaggaggaattttgccctactctggcctctttgttgtgggcccataacctgctaacaagccttcaggagaggagctgcctttccaccccttcaaggcaagggggagggaggtcccttatttccttcagaatgctccctatcccccatagttgctggactttctcatgttcccaggaagctcagaagtatggcagctaagaacacagctggctggaagaagacagggaccagactgtgaactgccaccctctgccagccctcatgcaactcagtccccagaatggcttcactggtagtggaggaagagttcggaggcccaggtgcagatgggtctgcaatttagtctgtagcctcctcattccataccctaaaattctaagggaagggacccatagaaccttgcctgtttccactactgtattatgcctactgttcctccccaccccatgtcctggggtcaggccagaccatgtttcttcagccttggggactagaccagtgttggacacctctaggaggaggcctgactgattcattaccctcccctactcaaactgagcagtagtcccagataaccaagcaagctcagctctgcgggccctccttcaaaagtctaacatcacagacattaggaagctgcagggagagagatcataggtttgacctctgcccatgtggccatggagctggcctcagccctgtctctactgcttttctaaatgagcctggaataaacatgcagtttattcagtctgcatgttagtcactaagcagagggtctggacaccatcccccaagggcatttcacagaccagccaatgtttcaagcccaccttagccaggcacggtaaaacttggtgcatccttggacaccatctgcagtagccaccgctgatatgcactcgatccaccttcccgctgcaggccctttgtggaaccctcaggtagtgtccttagctaatctcttttaggaagcagagaatggggccaggaatcaaagtctcatgggtaatggaagcatgtcctaatactatgatggatatgagccaggtcagtatccagggtgtgggctccagaaggtgcttggatcactgtctacccctcaggggctgttgctccctacctcagtgactgcttttcttttcattgttttttactttttgtttagaaataattttagacttacagaaagtagcagaaatagtagaaaattcccatgtacttttcatctagcttctcccaatgataacctcttacaaagccatactgtagtttatcaaaaccaggaaattgccgtgtgtgatagcttatgcctgtaatcccagcactttaggaggccgaggccggtggatcacctgatatcaggagttcgagaccagcctggccaacatggtaaaaacccgtctctactaaaaatacaaaaattagccaggcatggtggcgggtgcctgtagtatcagctacttgggaggctgaggcaggagaatcacttgaacctgggaattggagattgcagtgagctagatcacgccactgccctccagcctgggcgacagagtgagactcctcaaaaaacaaaaccaggaagttaacattgataaactactactaactaatctatggacattcaaattttgctagttttccccttgatgtcctttttctggtccaggatcccacgttgcattttgttgtgtttccttcatctgtcagcctttgacagtttctccgtttttctttgtctttcatgaccttgccatttgggaagagtccaggccagttatttcatagaatattccccaatttgagtttgtctaatgtttttacatgatgtgattgagggtctgcatttttggcaagacaaccgcagaagtgatattgtgcccttcttagtgcctcctagcgaagggtggtggtaactttttgttttggggttttgagacggaatcccactctgttgcccaggctggagtacagtggtgcaatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctgctgagtagctgggattacaggcacccaccaccacacccagctaatttttgtatttttaatagagacagggtttagccatgttggccaggctggtctctaactcctgacctcaggtgatccacccacctttgcctcccaaagtgctgggattacaggcgtgagccaccatgcccagcctatgtggtggtaattttgatcacatggctaaggtggtgtgtgccaggtttctccactgcaaaattaggaattttctctttgaaattaataagaatcttctggggagatactttgaagctgtgtgaatgtctcatttatccttaaaattttgcctgctgattttcgtttccgtcatcaatgattcttgcttataacagatattgatgttgcgcttgcctaatggtgactttatttccttattttacttgtatttattaattggtattcaactataaagaagagctgtcccttctcatttatttatttgataatttatatcagtatgaatgaatggtatctgttttattctacaggttgtaatctaatgctaacatagtttattttgttgcttaaatcggctcagatttggccagtgagaactcattcagtaatgagtactcattggcacctgtgttgtttcagcattgcccctgtcactttttaagcattttctggcaccacaagatgtttcaggcttactcctgttttccctgtctcagccctgacatctgtcatttctcttagaagctcccagttccttttatatgagaaaaaaggaacttagaaaccaagtagttttttggtaccacttgaaacaaagtctggaaaccaagatctggacacagtatatattcctggctagagtctcattgctggagtgtcattgcttatagaccgtctcaacccacagagctggaaaacatatatgtatgtatgttaaaacatgcaaatacacatacctgaatttattattctgtctatccatctgtatgttattaaaaaccatgagccaggtatggtggcttatgactataatctcagcattttgggaggccaaggtgagaggatcacttgggcccaggagttcaagaccagcctgggcatcattccaagacctcatcctccaaaaattaaaaaaaaaaaaaaaaaatttagccaggcatggtggcacatttctgtagtcctagctacttaggaggctgaggcagaaggattgcttgagttcaggatgtcaaggctgtaatgagctgtgattgtaccactgcactgcagcctgagtgacagagcaagaccctgtctcatatttttaaaaataaataaaaatcatgagtttagatatggttttaatccaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]