2024-11-15 21:22:22, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_020799488 6974 bp mRNA linear VRT 10-APR-2017 DEFINITION PREDICTED: Pogona vitticeps testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_020799488 VERSION XM_020799488.1 DBLINK BioProject: PRJNA382134 KEYWORDS RefSeq. SOURCE Pogona vitticeps (central bearded dragon) ORGANISM Pogona vitticeps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018150950.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pogona vitticeps Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6974 /organism="Pogona vitticeps" /mol_type="mRNA" /isolation_source="Queensland, 58 km west of Eulo on Adventure Way" /specimen_voucher="1003387339" /db_xref="taxon:103695" /chromosome="Unknown" /sex="male" /geo_loc_name="Australia" /lat_lon="28.098 S 144.465 E" /identified_by="D OMeally" gene 1..6974 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:110082160" CDS 1101..6896 /gene="TOPAZ1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_020655147.1" /db_xref="GeneID:110082160" /translation="
MAVKYKHVVDINLEDKKFLMERKKLKDALGGHKQTASIVTSQNTLASQASKKRGSTPMKVELHRTNITIEKNCMNSLLEPEQITKNCVVATESLRKKLRHSLVKSEHYKEDVHKEDRSSVVELKSQKVTSSLQESSSCSLSEQEPQQKTWNLRKTAGPVFPEQKASKNQDKNKKTKRRGRHSIQHFSRLKCKGKKNCKSQLPIPENCSGNPVKARWSSVSHFSGNLETTKLSSRLDRTQRQANSSMLRLTELQEPERKTHDFSVALTITDFLESVEVTKQKSRCLLKCVENHEEIKKCRSGVEKEMHRMITRGFLKSKLCENNSKKLNWKPKMYVSEVPDRKKDVFANSVVTEQAADCFTEDVLVTRIGSDSKQQIGGKEEFLTSTELKKESRTSRKQTLEVSNIQLGKLSETVFGISQDCSIQNFLEQSAHHPVSKSDETENKDPVSLSFGKVSETNCALTNTKCPQLLDIKVAEKKSGVHQDEEVEWLSKHGGLPHRVERIPVVRLHDCCYIKALLKPTGIKTIQNYRDHFRSLHVVHDQGKVLPPSRGMGQNDSNSSSNVVQPGRYVPEKSILVKKEMCQNSNKLSEYQNGKRFRESKRCVDKKPTKKIRISKKLEKSIVQNVFTSTNIQGQCGLQIKEEPDTLGSSVLEIVKCDETTCLSSLDCIPDFQEQCPQTLQNQIVNLLNSEKMRETHLVTCNTSNFEKSAVLRRRKNVLELESTEPQTEFSSKVTDTNSLAELLVSGKISSCDSIVASGVERGKRSPTIKRASKTERNFQPYSCQRAVPISGKNVWPRESCARTSLWFHDSRMADLEKGFLRSTDSSVNPGQTDLHEALTDTRKGLTDNITDVKIKESPTSESVFCIGKVISTFDNKNRFTSMGMERPKRCTPSTKMGKQSKVDSESLGKDAKSKGNIIKGGKIVDKHSSTLVSAKGKMKYQKISVVKQEMLLQKLHTENLSDFRIPILKDKNETIKKEYATSPEKSVCSLLDILEDPTASVRKGEEALSGHQFQSQEVTSTNILEEHANQFNSDTSESNFKEGTACKGKLVCTSLDSKLETSTWKDNSSSFTAGDTKNQTFGTVLASEIKSEDEYSNYLTQEEDNFYADVMKAYENDVLVIDVIQDDPDLFGDTEEQESSCNEEYCTENKSSTTVFSGQEVKLEPEVPQLPGISHWRLYPREVPIQDCGTMKSVIDVPLTVDSLSGISSVEGKTESSVEEEQLIESDELIKGYYRDEKCKLSKKIVAVKEEKANIQATVKIENAQHIEPVSHNHQLELPSPVMKTSGPQLQSTAVKPWTNDCRLLRNNLHLPSYPTNYVAWKKDKTGVTNVGLISVPNGYCRSYFNTLKGCGRTKCWYWHVPKPENEKFFSEILEKYISIGEAGLLKRAVQIFTNFYKEGILSLHFNSQVLNDLLISLLQSCLLKELFYVVHTCITIKILPTVDILLRTFEQVASMNLKELVPDLIDVSCKLVDAGMILEYEHVGCIRKFLNQLQLSSQEITTFTSRFQGTYLHKASLCDFTSAVAEFQHCKEKGDWARLGTLYVNLRRRCENFDDLEKYSLCIADILTSFVKEERPAIPFCEFAAAVNADAYHNEADRTLLGRIGISVMFSYYRKQQWLKARKVLDVLHTLKIPFTFLKGLLGPERLVSRCCIVNVAVEIFLKCGSLDGAIWVLRESEWVINSLSWPCNRMDVLSRHNLLCTIASEYITKSRHGEAFEVLQNLPGFQNSCDSMDVSQYSFLFNKLLGACLDNEHIGISSTVMEFMFSKNIPVEFKLLRAMITSLGRSCMWLKARTHYKSALALGCYPPQEGNLYHKRLLIPSFMSEIEMLLGIEIFLVSNASSIQSPGAFNQILQIVLKRCEGHSIQKEEDYQSATERLIQAARISSPKLFIKLLTVNVNKEKVYSLKYASVLKWLKENMKWAGKVWLF"
misc_feature 5685..6212 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:464250" ORIGIN
gcttttctctctttcagagtgtgagtgcgcgaagggaggctcggcggcaggcggcgtggcgaccgcgcgaagagagaagttggcggcgttgcggaaagtcctcctttcgggcctgtaaaacgaagcatgcgcagggatgggatgtagtagccttagggcctgccttaattggggttggttacaaggcgggcgttgagttgtaagcgaaaggaagtggccgcgtggagttgcgcgcgggctcctcgaaggacagcttttgtaggggggatgttgtagggccgacgacctgaacaatgctctttagatttgtgatgatgttaaatggaggcgagggtgttaaatggagagttttttgagagtagtaaacggggttggtttccagttggtttcagagaaggcggaatacgagacccacgtgtcttaccttaaatcgtaaatccttacgaagtggggggggtcgttcagacgagtccctggtgttgacacgcaaactctgtttttgtccctgttttgatcatggtttttttaatggtgccctgacaaaagaagtgtcgagtggcgtggcaggccatcaagtgaaatcctttaagcgtctcttaattctttcgattaaaaaatattttaagtttgagactttttgggcagccagtaagatgaaagttaggaggtttattgctgacatagaacgggttcatttataacgctgttgatttaagaaatcataggtaagcctgattttgtggagaaggttgtgattggttgtatgatttacagataatgaaaatgcacctgtcggaaaagcttattcgtttgggtagtttattccagggttgtgcaaaaaagccagagtaataagcaagaacacacttcattttatttgttttcatgatctgggcgacaatccagagcacccaaccatagttgttatcattaaatctcagagaaatcaaagttgcagaaacaggcaatttgtctctcttggtaaaacttaggaacttgagcagacaacacactcatatttttggggaactcttaatgaagcagcaaaaaagaaacaagggcttgtctttaaaagcaagagaagtggggaaagtagtaccatggcagtgaaatataaacatgttgtagacataaacttggaagacaaaaagtttttaatggaaagaaagaaattgaaggatgctctaggaggacataagcaaactgcttctatagttacttcgcaaaatacgttagcatcacaggctagcaagaaaagaggtagtaccccaatgaaagtggaattgcatagaacaaacataaccattgagaaaaattgtatgaatagcttgctggaaccagaacaaataaccaaaaactgtgtagttgctacagagagcttgagaaaaaagctgagacattccttagtaaaatcagagcattacaaggaagatgtacacaaggaggacaggagttctgtagttgagcttaagtctcagaaagtaacaagcagcttgcaggaaagtagcagctgttccctctcagaacaagagcctcagcagaaaacatggaatttgagaaaaacagctggaccagttttccctgaacaaaaggcttccaagaaccaggacaaaaacaaaaaaacaaagaggaggggtagacatagtattcaacacttcagccgcttgaagtgtaaggggaaaaagaactgtaaatcacagttaccgatccctgaaaattgttcaggaaatccagtaaaggcgaggtggtcttctgtatcccacttcagtggtaatcttgaaaccaccaagttgtccagccggctggatagaacacagaggcaagcaaatagttccatgttgaggttgacagagcttcaggagccagaaaggaaaacacatgatttttctgttgcactgactatcacagattttttggaaagtgtggaggttacaaaacaaaagagtcggtgtttattgaaatgtgtagaaaatcatgaagagattaaaaaatgtagaagtggtgtagaaaaagaaatgcataggatgataacaagaggttttttaaaatcaaagttgtgtgaaaataatagcaagaaactaaactggaagccaaaaatgtatgttagtgaggttcctgaccgtaagaaggacgtttttgcaaacagtgtggtaacagaacaagcagcagactgttttacagaggatgtgctggttactagaatagggagtgatagtaagcaacagataggtggaaaagaggaatttctgacttcaactgaacttaaaaaagagagcagaacatctagaaagcaaaccctggaagtttcaaacatacagcttgggaaactgtcagagactgtttttggtatttctcaagattgtagtatacagaatttcctagagcagtctgcacatcatccagtatctaaatcagatgagactgaaaacaaagatcctgttagcctttcatttgggaaggtgtctgaaacaaattgtgctcttacaaacaccaaatgtccacagctcttggatataaaagtagctgaaaagaaatcaggagtgcaccaggatgaagaagtagagtggctttctaagcatggtggcttgccacacagagtagaaaggattccagtagtgagactgcatgactgctgttacattaaagcattgttaaaacctactggtatcaagaccattcaaaattatagagatcattttcgatccttgcatgttgtgcatgatcagggaaaggttctccctcctagtaggggtatgggacagaatgattcaaatagtagctcaaatgtagtgcaacctggaaggtatgtgccagaaaaaagcatactggtgaaaaaagaaatgtgccaaaatagtaacaagttgtcagaataccaaaatggaaaacgcttcagggaaagtaagcggtgtgtggataaaaagccaaccaaaaagataagaatatcaaaaaaactagaaaaatccatagtccagaacgttttcacaagtacaaatatacagggtcagtgtggactgcagataaaagaagaacctgacacattgggttcttcagttttggaaatagtaaagtgtgatgaaacaacttgcttatcttcacttgactgtattccagattttcaggagcagtgtcctcagacacttcagaatcaaattgttaacttgcttaacagtgaaaaaatgagggagacacacttagtcacatgcaacaccagtaactttgagaaatctgcagttcttagaagaagaaagaatgtgcttgagttagagagcacagaaccacaaacagaatttagcagtaaagtgactgatactaattccctggcagagttactggtcagtggaaaaattagtagctgtgatagcattgttgctagcggtgtggaaagagggaaaaggtcacctaccataaaaagagcaagtaaaactgagaggaatttccagccatacagctgtcaaagagcagtcccaatttctggtaaaaatgtatggccacgtgaatcatgtgccagaacctccttgtggtttcatgatagtcgtatggctgacttggaaaaaggatttttaaggagtactgattcatcagttaaccctgggcagacagatctgcatgaggctttgacagatactagaaaaggtttaacagataatataacagatgtcaaaataaaagaaagcccaacttcagaatctgtattttgtataggcaaggttatttcaacctttgataataaaaatagatttacttccatgggtatggaaagacctaaaaggtgtacacctagtactaaaatgggaaaacaatcaaaagtggattcagaatctctaggaaaagatgcaaaaagtaaaggaaatataataaagggggggaaaattgtagataagcacagtagtacgttggtgagtgcaaaaggcaaaatgaagtatcagaagatatcagttgtcaagcaggaaatgttattgcaaaaattacatacagaaaatctttcagacttcagaattcctatactcaaggataaaaatgaaactataaagaaggaatatgctacatcgccagaaaagagtgtttgcagtcttctggatattctggaagatcctactgcttctgtaaggaaaggtgaagaggctttatctgggcaccaattccagtcccaggaggttacttctactaatatactggaggaacacgcaaaccaattcaacagtgacacttctgaaagcaattttaaagaaggaacagcctgtaaaggtaaattggtgtgcacttcacttgacagtaagctggaaacatcaacgtggaaagataattctagctctttcactgctggagatacaaaaaatcaaacatttggcactgttttggcatcagaaattaaaagtgaagatgaatatagcaattacttgacgcaagaagaagataacttctatgcagatgttatgaaggcttatgaaaatgatgttcttgtgattgatgtaattcaggatgatcctgatctctttggagatacagaagaacaagaaagttcttgcaatgaagagtattgcactgaaaacaaatccagtaccacagttttttcaggacaagaggtgaagctagaaccagaagtgcctcagcttccagggattagccattggagactctatcctagggaggttcccattcaagattgtggaactatgaagtcagtcattgatgttcctttgacagtagactccctaagtggaatcagttctgtagaaggtaaaacagagtcatctgttgaggaagaacagctgattgaatcagatgaactcataaagggttattacagagatgaaaagtgtaaattatctaagaaaattgttgctgtgaaagaagaaaaagcaaatattcaggccactgtaaaaattgagaatgctcagcatattgaacccgtgagccacaaccatcaattggaattaccatcccctgttatgaaaacgtctggtccacaattacagagcacagcagtgaaaccatggacaaatgattgcagattactaaggaacaatcttcatttgccatcttatcctaccaattatgtagcctggaaaaaagataaaactggagtgactaatgtaggattaatttctgtacctaatggatactgcagatcatatttcaatacattaaaaggttgtggaagaactaaatgttggtactggcatgttcctaaaccggaaaatgaaaagttcttcagtgaaatacttgagaaatatataagtattggtgaagcaggtctgctgaagcgtgcagtccagatatttacaaatttctacaaagaaggaattctcagcttacacttcaattcgcaagtgctgaatgacctgcttatatctttgcttcagtcctgtttgctgaaagaactgttttatgtagttcacacctgcataacaattaaaatactgccaacagtagacattcttctccgaacgtttgaacaagtggcttccatgaatttaaaagagctagtacctgacttaattgacgtttcttgtaagcttgtggatgctggaatgatccttgaatatgaacatgtaggctgtatcagaaagttcctaaaccaactacaactttccagtcaggaaataactacttttacgtccagattccagggaacgtatttgcacaaggccagtctttgtgactttacttccgcagtagcagaatttcagcattgtaaagaaaaaggtgactgggctagattgggaactttgtacgttaatttgaggagacggtgcgaaaattttgatgatcttgaaaagtactcgttgtgtattgctgacatcctaacaagttttgtcaaagaggagaggccagccattcctttttgtgaatttgcagctgcagttaatgcggatgcatatcacaatgaagctgacagaacattattgggaaggattgggatcagtgttatgttttcatattacagaaagcagcaatggctaaaggccaggaaggttctggatgtccttcatactttaaagatacctttcacatttttgaaaggacttcttggtccggagagactggtatcaagatgttgcattgtaaatgttgctgtggaaatatttctcaaatgtgggagcctagatggagcaatatgggtattgagagaatcagagtgggtaataaattccctgtcatggccgtgcaatagaatggatgtccttagtcgacataatctgctgtgtacaatagcatctgaatatattacaaagagtcggcatggagaagcatttgaagtcttgcaaaatctaccaggctttcagaattcttgtgatagtatggatgtatcccagtacagctttttgtttaataaactgcttggtgcttgtttagacaatgaacacattggaatatcatctacagtcatggagttcatgttttcaaagaacattcctgttgaatttaaattgcttagagcaatgattacatcattgggaagaagttgtatgtggcttaaagccaggacacattataaaagtgctttggcattggggtgctatccaccacaggagggaaatctttaccataagcgcctgctgataccatctttcatgtctgaaattgagatgttgttaggaattgaaatcttcttggtttcaaatgcaagtagtattcagagccctggtgctttcaatcagatacttcagatagtattgaaaagatgtgaaggccacagtatacaaaaagaagaggactatcaaagtgcaacggagagactgattcaagctgctcgtatatccagtccaaagcttttcataaagcttttgacagtaaatgttaacaaggagaaagtttatagtttgaaatatgcttctgtacttaaatggttgaaagagaatatgaaatgggcaggaaaggtctggcttttctagtcaattgttgataacactttagttgacagtaatcattgttcaaaataatatatcaataaaatacttttgttgtgttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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