LOCUS       XM_018059407            1647 bp    mRNA    linear   MAM 08-SEP-2016
DEFINITION  PREDICTED: Capra hircus ClpB homolog, mitochondrial AAA ATPase
            chaperonin (CLPB), transcript variant X2, mRNA.
ACCESSION   XM_018059407
VERSION     XM_018059407.1
DBLINK      BioProject: PRJNA340281
KEYWORDS    RefSeq.
SOURCE      Capra hircus (goat)
  ORGANISM  Capra hircus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Caprinae; Capra.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030822.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Capra hircus Annotation Release 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Capra hircus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9925"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /breed="San Clemente"
     gene            1..1647
                     /gene="CLPB"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 ESTs, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 14 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:102175318"
     CDS             69..1589
                     /gene="CLPB"
                     /codon_start=1
                     /product="caseinolytic peptidase B protein homolog isoform
                     X2"
                     /protein_id="XP_017914896.1"
                     /db_xref="GeneID:102175318"
                     /translation="

MVAAINRNDSVVQVLLAAGADPNLGDDFSSVYKTAKDQGIHSLEVLVTREDDFNNRLNNRASFKGCTALHYAVLADDYRTVKELLDGGANPLQRNEMGHTPLDYAREGEVMKLLRTSETKYQEKQRKREAEERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVEGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAERRPPKLRLEIIDKDSKTRKLDIQAPLHPEKVCHTL"

     misc_feature    order(69..74,81..89,93..98,108..110,117..119,144..146,
                     150..152,264..266,276..281,288..296,300..305,315..317,
                     324..326,351..353,357..359,363..365,375..380,384..392,
                     393..395,405..407)
                     /gene="CLPB"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:293786"
     misc_feature    <69..>389
                     /gene="CLPB"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    150..353
                     /gene="CLPB"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <480..1430
                     /gene="CLPB"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; Region: ClpA; COG0542"
                     /db_xref="CDD:440308"
ORIGIN      

aagtcagcagactgttgtcggaaggtgcagatgtcaatgcaaggcacagacttggctggacagcactaatggtggcagccatcaaccgaaacgacagtgtggtgcaggtcctgcttgcagctggtgctgacccaaacctcggggacgattttagcagtgtatacaagaccgccaaggatcagggaatccattctttagaagtcctggtcacccgagaggatgacttcaacaaccggctgaacaaccgcgccagcttcaagggttgcacagccctacactatgctgtcctcgctgatgactaccggaccgtcaaggagctgcttgatggaggagccaatcccttgcagaggaatgaaatgggacacacacccttggattatgctcgagaaggggaggtgatgaagcttttaaggacttctgagaccaagtaccaagagaagcagcggaagcgggaggctgaggagcggcgccgctttccgctggagcagcggctgaaggagcacatcattggccaggagagcgccatcgccacagtgggcgcagcgatccggaggaaggagaatggctggtacgacgaagaacaccccctggtcttcctcttcttaggatcatctggaataggaaaaacagaactggccaagcagacagccaaatatatgcacaaagatgccaaaaagggtttcatcagactagacatgtctgaattccaggagcggcatgaggtggccaagttcatcgggtccccaccaggctacattggccacgaggagggtggccagctgaccaagaagctgaagcagtgccccaatgccgtggtgctctttgatgaggtagacaaagcccacccagatgtgctcaccatcatgctgcagctgtttgatgagggccggctgacagatggaaaaggcaagaccatcgactgcaaggacgccatcttcatcatgacctcgaacgtggccagcgacgagatagcacagcatgcgctgcagctaaggcaggaagctttggagatgagccgtaaccggatcgccgagaaccttggggacgtccagatcagtgacaagatcaccatctcaaagaacttcaaggaaaacgtgattcgccccatcctaaaagctcacttccggagagatgagtttctgggacgaatcaatgagatcgtctacttcctccccttctgccactcggagctcatccaacttgtcaacaaggagttgaatttctgggccaagagagccaagcaaaggcacaacatcacactgctctgggaccgtgaggtggcggatgtgttggttgaaggctacaacgtacactatggcgcccgctccatcaagcatgaggtggagcgccgagtggtgaaccagctggcggctgcctatgagcaggacctgctgccggggggctgcaccctgcgcatcactgtggaggactcagacaagcagctgctcaagagtcctgaactgccctcaccccaggccgagaggcgtcccccaaagctgcgactggagatcattgataaggacagcaagacccgcaaattggacatccaggcaccactccaccctgagaaggtgtgccacaccctctagcgtctacctacctgcccacacgtgccctcaacacccaataaagcccccttggctgtgg

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