LOCUS       XM_017817990            6494 bp    mRNA    linear   VRT 11-AUG-2016
DEFINITION  PREDICTED: Lepidothrix coronata testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), transcript variant X4, mRNA.
ACCESSION   XM_017817990
VERSION     XM_017817990.1
DBLINK      BioProject: PRJNA338288
KEYWORDS    RefSeq.
SOURCE      Lepidothrix coronata (blue-crowned manakin)
  ORGANISM  Lepidothrix coronata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Pipridae; Lepidothrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016690244.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Lepidothrix coronata Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6494
                     /organism="Lepidothrix coronata"
                     /mol_type="mRNA"
                     /isolate="B3197"
                     /specimen_voucher="LSUMZ:110521"
                     /db_xref="taxon:321398"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /geo_loc_name="Peru: Loreto Department, 1.5 km S Libertad,
                     S. bank Rio Napo, 80 km N Iquitos"
     gene            1..6494
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108498816"
     CDS             225..6386
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1 isoform X4"
                     /protein_id="XP_017673479.1"
                     /db_xref="GeneID:108498816"
                     /translation="

MPRLRSGKMVSASEVGPFGSEGAGPGCQGAGCEPGRKLVTKRSLRLARKRKPEQPLPTCVQAARLASASFGQFAPLLPVQEEQGENGQEFPGRKNRGIQHRRGARSGSGVAPPISDAAECEDRQAAGTGAAVGCEETVKRGTGRSQQLFFSGTTLQNKFSEGIERKEHWSDHVDLSVFQEDSRSSEKDGKYGCMDIKSQIPSSEEEIESAKRHGVSCLPEPEGLRLREVTWSTEMKCTNSMMQNRQIPGFRENLGGQEAMTETKHQEEIDILAKLNGCPLVGSRQLGMQEKEKKCLSKKGGISLMKPKLYGPRKKGSSVLLELHAQCPESRKGLVNMRKRDRNALVQGVDGQEQPPTRRKTYKRCMKEEWQSSVPQKGADSPGENAEEQLKAIEQDSGTSWAVKNVNAEQNRPEDSKEMESHYSKSPMVAVLGGTQSKSFLCHGVTKKSGVQCKVSQPKKRKPRNGQIKHLQSLTAAEKVNTSVKCDAEHCRNALKHCSGLLCATEKNPYVRLEDCSYINTLVKLSTSGTTSSYKLNGFFHVAHGTVEVSDTICSNSRMLNEISPVKGGLSSNEEKNENGEGRLSCCLSESNKCLREKKWNIGRKPRKKMKITEKLEVQDTFTGMANECSKCELQAEAAVAISSSFAVSGLNHTLSDSRDHELNLHMGKNTHEAQNISAWRMKSTKVPAFENAVKKRSELSVIVKGENSSLVAHQSAASGTLRALAQVHDTCDCHKSKTGGKLNNVNKEFQQFTCQRAVPMTGKKVWPVESCARTSEWVYKNHGSISEGKRLLKAAFEDFSDKSSVKAVGGSAVTGSLRQLDLPVSLAETTKESAHKRIDPNTECQTSLETPESSSVDIYKTSRMSNENGESSVNVDRSCLAFNHDDVQEVKGTWNFTTKRKGKNDRDVTNRNLSVTVKKGITKQKNKSEGDVTTENLSVTVKKGITKQKNKSEGDVTTENLSMTVQKGTTKQKDRNEEDVTKRNLSLTVQKGTSTGNTNRINFSSKVSLVNQTFSDLQLIKGLNPENLTKFRIPLCRNRPESRKLKSVHSFERKTCSPLELESTGVSRQKTGEETVVVNYEQHPFPVMSDATSAASVKKTAYEIDSKDFQHNGSENFSNGIFVLPKNFSAYRHPLLDGQPESSVPDFSGSECVLKPSFPDHSWNSVDRPVGLQINDDSKSQEILSQHESQNSPDILEAYKQDILVIDVIQDDPDLFGTSNEEELALACENCPVKASCTNICIKDTNPESPITSEKRHSVENSSGCMQEFGISNDIENSCDLVLKAEDIKTHNSSRGSSPLGDVTEDFLKDGRPSELDELLKSFDVNEKFKIADGVPNVKEEKKSEAEKSDCKYKDLVNCELLSGSPLNDPKVNIFSEAPVMKSWTNVYKPSGKSPLQTLKNFGDFEPWRMEKNANASHSVQQILDALDLPRKYCRYYFMTSRGCARARCRFCHVPEQGDEKICMAILRTYINIKEPGLLKRAVQIFVRYYRGVIPGVDFSSQVLNDLLVSLLKNCLLQEVFWILNVTVEIKTLPTTDVLLKVFEQVASLNLRDAVPTLIRTFRKLVDAGMFLELDHFDYIVKLLHQLQVSSWEISVVLNIKSRFRERHHFEKNWLFDFNLAADEIQHCKEKRDWTKLGTLYLNARTGCECFEDFQKLFLSIAEILTRDSESDRPEVPFCDFADAVMKNSQPNEADRLFIGRTGISVMYSYHEVLQWTKGRKVLDKLHELQIHFTLMKGLIGAGKSASRCQIVNKAAEIFLNCGSLDGATRVLRESEWTTNAPLWPCDKMDILNRRNLLHTLVHKYLSKSLYRQAFEVLQNFPGLQKHSDIVDVSQYSCLFNKLINACFENKSLGVSSSAVDFMLSKNIAIDFILLRRLITALGRSSLWSKARTYYKNALSLGCYPQLQGNSYHKLLKIPSYLSEVEMLLAIEIFLVSNASYIQSPMTTSQTLQIILKRCEDQTVQDNSAYQMAVERLILAARLSDPKLFLKHMTMNVHMEEVYSLELSSALKWLQENMKWAEEVWLFRNSMGQTRQNSSVEWKQAWKDGKMF"

     misc_feature    5100..5621
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

gggggtgggggtgctgtcgggaggggctcgcctgtggccgtgtgcttttcctgagcggcctggctcttctgtcagccagggccccctcgggtgacccgtgaggcctgagaggggttgtgctcccctaggaggtgggcctgtgcccgccgcgggtgccgggctttcactggggtgcacctgcgagtgggtttttggggttctgctggtgtctttgcgcccccgagatgccgcggttgaggtcggggaaaatggtatcggccagcgaggtggggccgtttggctcggaaggcgccggccccggctgccagggtgcagggtgtgagccagggagaaagctcgtaacgaagcggagtcttcgcctggcgcggaagagaaaaccagagcagcccttacctacctgcgtgcaagctgccaggctcgccagcgcttcctttgggcagtttgctcctcttttgcccgtgcaggaggagcaaggtgagaacggccaggaattcccaggtagaaaaaacagggggatacagcacaggaggggtgccagaagcggcagcggtgtagctccgccaatttcagacgcagccgagtgtgaagatcgacaggcagcaggtacgggtgcagcagtaggctgtgaagagactgtaaagagagggacagggcgaagtcaacagctgtttttctcaggaactactttgcagaataagttctcagaagggattgagaggaaagaacactggtcagaccacgtggacctctcagttttccaagaggattcaaggagttcagaaaaagacggcaaatacggttgtatggatataaaatcacaaattccatcctcagaggaggaaattgagagcgcaaaaagacatggcgtttcctgtcttccggaaccagaagggctgcgactcagagaggtcacatggagtactgaaatgaaatgcactaactcgatgatgcagaataggcaaatccctggttttagggagaatttggggggtcaggaagccatgactgaaacaaaacatcaggaagagattgatatactagcgaagctgaatgggtgtcctttagttggatcaagacaactagggatgcaggagaaagaaaagaaatgcttgagcaagaaaggcgggatatcattgatgaaaccaaaactatacggtcccagaaagaaaggtagttctgttttgctagaactgcatgcacagtgtccagagtctaggaaaggacttgtgaatatgaggaagagggatagaaatgcactggtacagggcgtagatggacaagaacaaccaccaaccagacgaaagacgtacaagcgctgcatgaaagaagagtggcagagctcagtccctcagaaaggagcagacagcccaggggaaaatgcagaggagcagttgaaagcaattgagcaagattccggtacttcatgggctgtaaagaatgtaaacgcagagcaaaacagaccagaagattctaaggaaatggaatctcactactctaaatctcctatggttgctgttttaggtgggactcaaagcaagagctttctatgccatggtgtaacaaaaaagtctggtgtgcagtgtaaagtaagtcagcctaagaaaagaaaacccagaaatggtcaaatcaagcacttgcaaagtttgactgcagctgaaaaagtgaacacatctgtaaaatgtgatgctgaacattgcagaaatgcccttaaacattgtagtggcttgctctgtgcaacagaaaagaatccatatgtgagattagaagactgtagttacatcaatacattagtgaagctttcaactagtggaactaccagcagttataaattaaatggattcttccatgtagcccatggtactgtagaagtgagtgatacaatttgcagcaatagtagaatgctaaatgagatatcacccgtaaaaggtggtttatcgtctaatgaagaaaaaaatgaaaatggagaaggccgtctttcgtgttgtctgagtgaaagcaataagtgtttaagggaaaaaaagtggaatattggtaggaagcctagaaaaaagatgaaaatcacagagaaattagaagtgcaggatactttcacaggcatggctaatgaatgcagtaagtgtgagttacaagcagaggcagcagttgcaatatcaagctcctttgcagtttcagggctaaatcatactctgtcagattcacgtgatcatgaattaaatcttcatatgggaaaaaatactcatgaagcacaaaatatatcagcctggagaatgaagagtaccaaagtacctgcatttgaaaatgccgttaagaagagatctgagctctctgtaatagtgaaaggagaaaattcaagccttgtggcacatcagtcagctgcctcaggtaccctgagagcgctagctcaggtccatgatacttgtgactgtcacaaaagcaagacagggggaaaattgaacaatgtgaataaggaatttcagcagtttacctgtcaaagagcagtacccatgactggtaaaaaagtttggcctgttgaatcttgtgccaggacttctgaatgggtttataaaaatcatgggtccatctcagaaggaaaaagacttttaaaagctgcctttgaggatttctctgataaaagcagtgttaaagctgtaggaggtagtgctgtgactgggagtttgagacagttggatttgcctgtgtcattggcagaaactacaaaagaatctgcacataaaagaattgatccaaatactgaatgtcagacttcacttgaaacaccagaatcctcttctgtagatatttacaagacttcgagaatgagtaatgaaaatggggaatcatcagttaatgtagatagaagttgtttggcttttaaccatgatgatgtgcaagaagttaaaggaacctggaattttacaaccaaacgaaaaggtaaaaatgacagagatgtaacaaacagaaacttgtctgtgacagtcaagaagggtataacaaaacaaaaaaataaaagtgaaggagatgtaacaactgaaaacctgtctgtgacagtcaagaagggtataacaaaacaaaaaaacaaaagtgaaggagatgtaacaactgaaaacctgtctatgacagtccagaagggtacaacaaaacaaaaagatagaaatgaagaagatgtaacaaaaagaaacctgtctctgacagtccagaaaggtacatctacaggtaacacaaatagaataaactttagctctaaagtgtcactagtgaaccagacattttctgatttacagctaattaaagggttaaaccctgaaaacctgacaaaattcagaattcctttatgtagaaacagacctgaatccaggaaattgaaatccgtccattcatttgaaagaaaaacctgtagtccactagagcttgaaagcactggtgtttcaagacagaagacaggtgaagagactgtggtggtaaattatgagcagcacccttttcctgtcatgagtgatgctacatctgcagcctctgtaaagaaaacagcatatgagattgatagtaaggactttcagcacaatggctctgaaaacttctcaaatgggatatttgtgctccccaaaaatttttctgcatatcgacatcctcttcttgatggacaaccagagtcatctgtgcctgatttctccggttctgaatgtgtgctgaaacctagttttcctgatcattcttggaattcagttgaccgccctgttggattgcaaataaatgacgatagcaaatcacaagagattctttcacaacatgaaagtcaaaattcaccagatattcttgaagcttacaagcaagatattcttgtcattgatgtgattcaggatgaccctgatctttttggaaccagtaatgaagaggagctagcccttgcatgtgagaattgtccagtgaaagcgtcctgtactaatatctgcattaaagacacaaatcccgagtctcccattacctcagaaaagagacattcggttgagaatagttctggatgcatgcaagaatttggaatatcaaatgatattgaaaattcctgtgatttggtgctaaaagctgaagatattaaaacgcacaactcctccagaggaagcagtcctttgggagatgttactgaggactttcttaaagatgggcgaccaagtgaactggatgaacttttgaagagttttgatgtgaatgaaaagttcaagattgcagatggagtgcctaatgttaaagaagaaaaaaagagtgaagctgagaaaagtgactgtaaatacaaagatcttgtgaactgtgaattgctgtcaggatcaccactgaatgacccgaaagtaaatatcttcagtgaagctccagtgatgaaatcctggacaaatgtttacaaaccgtcaggaaagagtcctttacagacattgaagaattttggagattttgagccatggaggatggagaaaaatgcaaatgcttctcattcagtccagcagatcctcgatgcacttgacttgccccgtaaatactgcagatactatttcatgacttcacgtgggtgtgcaagagcaagatgtcggttctgccatgtccccgaacaaggggatgaaaagatttgcatggcaattcttaggacatacattaatatcaaagaaccaggcctcctaaaacgtgcagttcaaatatttgtgcggtattacagaggagttattcctggtgtggatttttcttctcaagtgttgaatgatcttcttgtttctctgctcaagaactgcttgttgcaggaggtattttggatattgaatgtaaccgtagaaatcaagacactgccaactacagatgttcttctgaaagtttttgagcaagtggcttctttgaatttaagagatgctgtgcctacattaatccgtacctttcgtaagctcgttgatgctggtatgttccttgagttagaccattttgactatattgttaagttacttcaccaattgcaagtttctagttgggaaataagtgttgttttgaacataaaatccagatttagagaaagacaccattttgaaaagaactggctttttgatttcaacttagcagcagatgaaattcagcattgtaaggaaaaaagggattggaccaagctgggaactttgtatcttaatgcaagaactggatgtgaatgttttgaggattttcagaaattatttttatctattgctgaaatactaaccagagattctgagtcagacagaccagaagttcctttctgtgattttgctgatgcagtaatgaaaaattcacaacctaacgaagcagacagacttttcattggaaggactggaataagcgtaatgtattcttatcatgaagtactgcagtggacgaagggaaggaaggttttggataaactgcacgagctacagatacattttacactcatgaaaggacttataggtgcagggaagtcagcatcaagatgtcagattgttaataaagctgcagaaatcttccttaattgtggaagtttggatggagcgacaagggtattgagagagtcagagtggaccacaaatgcaccattgtggccttgtgataaaatggacatcctcaatcgacgcaatctgttacataccctagtgcacaaatacttgagtaagagtttgtacaggcaggcttttgaagttctgcagaacttcccaggcttgcaaaaacattctgatattgtagatgtttctcagtacagctgcctttttaacaagctgataaatgcctgttttgagaacaagagccttggggtctcatcttctgcagtagacttcatgctttcaaaaaatattgctattgattttattttacttagaagattaatcacagctttgggaagaagttctttgtggtctaaagctaggacatattacaaaaatgctttatcattgggttgctacccacagctgcagggaaattcataccacaaacttttgaagattccatcttacctgtctgaagttgagatgctgttggccattgaaatatttcttgtttcaaatgccagttatattcaaagtccaatgactactagtcagactcttcaaataatactgaaaagatgtgaagatcagacagttcaggataacagtgcctatcaaatggcagtggagagactgattctagcagctcgtttatctgatccaaagctttttcttaagcatatgacaatgaatgttcatatggaagaggtttacagcctggagctttcatctgctctaaaatggcttcaggagaatatgaaatgggctgaggaggtctggctgtttcgaaattccatgggccaaacaagacaaaactccagtgtggaatggaaacaagcctggaaagatggaaaaatgttctgaagagtaaagttaagtacaatagagacaatgctgttttgcagagccagccactcaatatattgacgatatccatatttttgctttttcccagatgtaagttaaactgaa

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