2024-11-15 18:37:54, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_017558173 1928 bp mRNA linear PLN 28-DEC-2022 DEFINITION PREDICTED: Vigna angularis protein NETWORKED 4B (LOC108325156), transcript variant X3, mRNA. ACCESSION XM_017558173 VERSION XM_017558173.2 DBLINK BioProject: PRJNA911773 KEYWORDS RefSeq. SOURCE Vigna angularis (adzuki bean) ORGANISM Vigna angularis Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_068972) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 28, 2022 this sequence version replaced XM_017558173.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_016808095.1-RS_2022_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1928 /organism="Vigna angularis" /mol_type="mRNA" /cultivar="LongXiaoDou No.4" /db_xref="taxon:3914" /chromosome="3" /tissue_type="leaf" /dev_stage="squaring stage" /geo_loc_name="China: Harbin, Heilongjiang" gene 1..1928 /gene="LOC108325156" /note="protein NETWORKED 4B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins" /db_xref="GeneID:108325156" CDS 65..1756 /gene="LOC108325156" /codon_start=1 /product="protein NETWORKED 4B" /protein_id="XP_017413662.1" /db_xref="GeneID:108325156" /translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLISFANDCYDSYSESCDVEESGESEIDDPEQEEEEDSIFNNCAQLEEVQFERLGEENKDHKGQNKQKYNIYEAVMLREEIEQLRKENRVQKDELDRKSITFVELMMLREEIEQLRKENRAQKDELNQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMMLREEIEQFRKENRTQKHELNQKDIICGKAMMPREEIEQLSKENRVMKDELNQKSIICGEVMMLKEEIEQLRKENRAQKDELHQKDNICSEIMMLREEIGQLGKENAALKDELNKKYIICGEIMMLREEIEQLRKYNRGQKNELHQKGIKCEVTMSREEKENRVKNDELNPEDSVCGEVVMLREEIKRLEKDERAQKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENIRMRSFIAKESSNKWKNPFGLKNFMGSLSEQLFNGITNNQPSLVAL"
misc_feature 89..310 /gene="LOC108325156" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature <599..>1471 /gene="LOC108325156" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" polyA_site 1928 /gene="LOC108325156" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
attccatcgcaggcggtggtggcaagcattgcattaattcatacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacaacttgtgagcatggttgaagacttctataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggagggtcccccttttctccactcaagcatcatcaaccagagaagttgataagttttgcgaatgactgttatgatagctattctgagagttgtgatgtagaggagtctggggaatctgaaattgatgatcctgagcaagaagaggaagaggattccatattcaataactgtgcacaactggaggaagttcagtttgagagacttggtgaagagaacaaggatcataagggtcagaacaagcaaaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcgaccggaaaagcatcacttttgttgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcacagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaactcggtaaagaaaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaattcagaaaagagaatagaacgcagaagcatgaactcaaccagaaagatatcatttgtggtaaagcaatgatgccgagggaagaaatagagcaactcagtaaagagaatagagttatgaaggatgaactaaaccagaaaagtatcatttgtggtgaagtaatgatgttgaaggaagaaatagagcaactcaggaaagagaatagagcgcagaaggatgaactccaccagaaagacaacatttgcagtgaaataatgatgttgagggaagaaatagggcaattgggaaaagagaatgcagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatataatagagggcagaagaatgaactccaccagaaaggtatcaagtgtgaagtaacgatgtcgagggaagaaaaagagaatagagtgaagaatgatgaactaaacccagaagatagcgtttgtggtgaagtagtgatgttaagggaagaaataaaacgacttgaaaaagatgaaagagcacaaaaaggtaccctttctggtgaagtaatgaagttaaggcaggagaatagcgcgcagaaggaccatcttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacataaggatgagaagcttcattgctaaggaatcttccaacaaatggaagaatccatttgggttaaagaatttcatgggatcattatcagagcagttgtttaatggaattacaaataatcaacctagtcttgtagctctctagataaggttcacagagtaaataactaagttttgtagaacaatattaaaagatacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagtttagtatattcctaactaatccaagaccgagtatctagtggatttcctagacacttgtttttcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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