2024-11-15 17:34:07, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_006238756 3590 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus claudin 19 (Cldn19), transcript variant X1, mRNA. ACCESSION XM_006238756 VERSION XM_006238756.5 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086023) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_006238756.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3590 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..3590 /gene="Cldn19" /gene_synonym="claudin-19" /note="claudin 19; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 33 long SRA reads, 13 Proteins" /db_xref="GeneID:298487" /db_xref="RGD:1305000" CDS 426..1100 /gene="Cldn19" /gene_synonym="claudin-19" /codon_start=1 /product="claudin-19 isoform X1" /protein_id="XP_006238818.1" /db_xref="GeneID:298487" /db_xref="RGD:1305000" /translation="
MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAILGGSFLCCTCPEPERANSIPQPYRSGPSTAAREPVVKLSTSVKGPLGV"
misc_feature 435..971 /gene="Cldn19" /gene_synonym="claudin-19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 3590 /gene="Cldn19" /gene_synonym="claudin-19" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tttgggagggatgagaagaatcctagggcactgaaatcacactctgaaggggttcccctggctgggaggggagaagtcactcctcctagcccctcccttccttactattgagccgagaaaggcaggggtaccccagcttggactctaggttccgccctctgctcccaagaaactgggcaagagctctgctggggactggctgtgggcgggttttggccttttccagccccaaggccgccccctgcattctggaatccagcagccactgcctttgctgagctgaccggccagccatcccctctcctcctcttttcctgtgccacttagttccccttttccagctgttcctcttaccatgaccatagcgctcctccagaccctggcccatctctgagtcctggaaccctcagactcctacctgggccatggccaactcaggcctccagctcctgggctacttcctagccttgggtggctgggtgggcatcatcgccagcaccgccctgccacagtggaagcagtcctcctatgcaggcgatgccatcatcactgccgtgggcctctacgaagggctgtggatgtcctgcgcctctcagagcaccgggcaggtgcaatgcaaactctacgattcactcctggccctggacggtcatatccagtcagcaagagccctgatggtggtggctgtgctcctgggctttgtggccatggtgctcagtgtcgtgggcatgaagtgtactcgggttggagacagtaaccccactgccaagggccgtgtggccatctccggaggtgctctcttcctcttggcgggtctctgtactttgactgctgtctcatggtacgctaccctggtgacccaggaattcttcaaccccagcactcctgtcaacgccaggtatgaatttggtccagctctgttcgtcggctgggcctctgctgggctggccatcctgggcggttcctttctctgctgcacatgcccagagcctgagagagccaacagcatcccgcagccctatcgctctggaccctcaacggctgcccgagaacccgttgttaagttgtccacctcggtcaagggccccctgggtgtgtaaaggccaggttcccagccaggccctgccccctaccatctctagactgtgtgtttgatatttctggaaagagaagcgaacattcagccccaagtgtgatgtcatgctatctgttcccatgcgcctagggtggggcctggactagagaggccagagccagctcttggggtgaggtgggctccagggtacaggcagagcaggaagcagttagtttcctgctttgtatctctgcccgccccaccttggagtctggtaccagaacttccatgagggaagatcacagctacccctggaggcgtcacctaacgcctgcctggcctaataaaggagcaagacctcagggtgaggaagccctggcacggagaccattccataggtagaatgttctaggccctccctgggagccctcctgagggaaaagatagtttctgtgaggcccaaccgtaggggctcccttggtgatggaagggaatggagaggagcatggatggtatcaggacaaccccaagccaactccaaagccctccatgcaactgttatcctactcctgcaatgactgtcaacgctccctcaccctgaagtgtagtcagatgacaggacttctggtcttgaaatccaggtatgacgtactagaaaaggttaagtccttcaaggcgctgagagaaaccagcccagggaagcaaagggccagcagtgtccttcatcctccctatccagagagtgccggcccctctcttcactcataggcttctgccacccaagcctctccctggactccaggtctgtccctctccagggacgaggtgtccaccactctcgtcttgcttcccacatgccttccttgttagcccgctggtgtctacaaccgcgtctcccaccaagtgaaccccaggagccagtacagcttctgtgcagccctgaggtgcggataccaaaacattatagctgacggtggggagggcggggggaaagcaggtgaccaagcgcttctgtgctcaggtaatcacatacctgatgaactgctgaccaattcatcttctgacggatggtagccataagcccccgtggacacctctgatcctaaacaagtttcccaagggaggccccttgcaccataagtgccacagaagagctctctccaagtgcccaaagccatccggtgatccttggccttaggaccacactggagtcatttaagtggatgcccagcctccacccagacacaatgatttaattggtctagtggacccaggcttcagaattcacacagctccttcgaagtatgtggttcatctaggggtaactccttgaggcccacactcctgaccattctggagggatctgcagagggtggaaggagcctaccagaagacagtgggggagaggcaagactagaaaggaagtcctgtccacctcctgcctttccggagtcctgaccactggaggagacgcctatatccttcccattgatgtctctttgtgcttaaggaattcaactttgaatcctgtcacttgcagcctgactaactcagagcttgaaacctgtgaaccaagtgggacacagacagaccctccacagatctggtacttagcagcccttggtatttggttgtgaagctggcaggaagccacatgattcttcagagtccgagggctgggcggttcaagacatggtggtggggatcgtagaggcagaatgtgttggctacatcttgtggttgtcaggagtgggctccatgcaaggacaggagctgacagtggggtggcattgtctgttcctctattaaaggaagctcattctagccatacatactggagcctggaagggcagagtcatccacctttgatatttacatttgatccacatttgatatttacaccctgattaaaacccgcgaggtactgggggtgggaagggagagtgtgggagaaattgaaggagttttaagctaagagtttggggaatgtgatctcctgaagcaaacccattcaaacatccaagtctgttgtttactgttctaatctcaaggctgaaggatccaggaaagactggggaagatgaggctgactcaaaagggatggttctaaagttactgccgttgctttagtcccagaagtgaaactggcaagttagacattttgattccagaaggatggtagctccgtgttcctgaagttccaggtcctggggaaacagaccaggaagctgcaggctgggaagaagcttgaagatcattatggctggggcagtttcaagaagttgttacttttgtgttacataacactgttgctttgtgtgataatgacgctgatccttatctggcagaggtacgcctggaagcatgatggctggatttactttaactttttaaaacaggttcacaggcaaggagagctgtgatgctgggacgagccagcggctgacagggttcactctacccatttgtatgtttgctaatgaaagaaaaataagaaataaaaagtttgaaacga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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