LOCUS       XM_005695594            5196 bp    mRNA    linear   MAM 08-SEP-2016
DEFINITION  PREDICTED: Capra hircus testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_005695594
VERSION     XM_005695594.3
DBLINK      BioProject: PRJNA340281
KEYWORDS    RefSeq; corrected model.
SOURCE      Capra hircus (goat)
  ORGANISM  Capra hircus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Caprinae; Capra.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030829.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2016 this sequence version replaced XM_005695594.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Capra hircus Annotation Release 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-245               LWLT01000024.1     16017411-16017655
            246-387             LWLT01000024.1     16017657-16017798
            388-2827            LWLT01000024.1     16019010-16021449
            2828-2889           LWLT01000024.1     16032283-16032344
            2890-3017           LWLT01000024.1     16033048-16033175
            3018-3082           LWLT01000024.1     16040351-16040415
            3083-3225           LWLT01000024.1     16042296-16042438
            3226-3311           LWLT01000024.1     16043982-16044067
            3312-3437           LWLT01000024.1     16044940-16045065
            3438-3501           LWLT01000024.1     16047590-16047653
            3502-3653           LWLT01000024.1     16053921-16054072
            3654-3746           LWLT01000024.1     16054276-16054368
            3747-3862           LWLT01000024.1     16056744-16056859
            3863-3929           LWLT01000024.1     16060161-16060227
            3930-4104           LWLT01000024.1     16061364-16061538
            4105-4205           LWLT01000024.1     16062266-16062366
            4206-4371           LWLT01000024.1     16065329-16065494
            4372-4536           LWLT01000024.1     16072761-16072925
            4537-4740           LWLT01000024.1     16074591-16074794
            4741-4924           LWLT01000024.1     16076935-16077118
            4925-5196           LWLT01000024.1     16080091-16080362
FEATURES             Location/Qualifiers
     source          1..5196
                     /organism="Capra hircus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9925"
                     /chromosome="22"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /breed="San Clemente"
     gene            1..5196
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102175721"
     CDS             15..5144
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: testis- and ovary-specific
                     PAZ domain-containing protein 1"
                     /protein_id="XP_005695651.3"
                     /db_xref="GeneID:102175721"
                     /translation="

MARPRGPHFRFRSRGLGGEQRGAEPQVAGGRSSLPAAGGLLRAGAACLGGETGSPGRMWRPPPSGPTAAPGREGDARGLRKRSRRPGPGEAGGCGPEARGREESRQKRRMVAQASGKELESDKSAKEKRKVTEASSDDPQPGIDLVRKESLTSSESFPTVECSEFQSMAFLQSLGKERLVEGIKRRIRIKKFKSLESPALKMTENKATQNSKVEFQDELYKNTLKYSCNSLSPGVENNSTLKLHDCSCLSHSKDCNDENNLAYKPDGGCMHVPENSSKSKKENPRSLIDKTDPSNIPQLLQTEENLMRVSQLLLEENDSYLSKNNGMFSCLQSEKNKHSIEESSIGRKSRKRMKVSEKGNGMVIEMKFSNMCNKSELMIQGNQTGAEGKETETLEAKKSSLKVLRKVNNNTLSPMDPLLSLPETGKKTSPEHYANAVFQKALEQLSKEETKNVSQPLGCTSMDPPEDYFKSIENSLVKSLSDCFPIEKRSSREGLKNEAEESKYSCHRTIPMTGKRTWPCYSCARISAQCWKKASLPQSSRQDDFLRHQTNQTHLTDSKLMLQSSVTETNSASSSIEKLDSNLNCLPSISTVEPTSVVIKEPIVNDDEKMKSEELSRSASEVVSNITEDTPLSTVTHNSTGSKKKDRGNLTKLNLMVASQDGQEASNSTGKTIHRKACITKQALVVPDLVKILNTGRLTNFKIPLLKNKTEKRKEINAKSSEREVYSPLELLDSLSGAEVRQSRTKENAVTVTSGPQSLSIQHSVIPVQASSDSFCSKNSCFIAPSFLKQGNNNKPSSHISASGHIISNKAAGSLTVENNTFSCDPGCIEKNPTFYSNEQEPFKAVSSEVSGKKMSKNFSEIKVGFPDILKAYEDDVLLIDVIQDDPDLFGVSSEGELSFPSEVPMISQEPNVAEEHQSADSKHMELPEKKEPGDDLRELPVPDPGSVKSEICASLSAASEIKHDSKDANISLGEVTHETSSNEKPGGLSEQTKSSDLDEKCRFSDKVAIREEKETISEVFRSDSKNTEIMVGEGHLAALVSKPLCLPVPLPPLNLSTHQEDTLLNPWMNDFRLPGKHSLLKLQNPEICEIFKREKNLGVFQKPLGLTIPHRYCKFHFNMIRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAANMFMEYYRKFLPGIHFDLQVLNDLLNSLLKHCLLKEVFQIMNLCIMIKMLPALKILLKIFEYVATMKLRNAVPALIDMFCKLVEAGMVLDLEHFNYIVKLLYQVQASKQEITAVLEMKSRLRMRQFKKNWKCDLEAALNEIEHCKEKGDWTKLGNVYLNIKMSCEKFADFQRFCAYIAEILTKDCKEERPGVPFCEFAETVSKDLQNSEVDKTLLGRIGISAMYFYHKLLQWSKGRKVLDKLYELKIHFTSLKGLIGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIINTPVWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVAEFMISKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQMLQIVLKRSEENKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNNR"

     misc_feature    3924..4451
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

tcgtcgcatttgccatggccaggccgcgcgggccccacttccgcttccggtcccggggtcttggcggcgagcaacgcggggcggagcctcaggtagctggcggaaggagcagccttccggcggctggtgggctcctgcgagcaggcgcggcttgcctcggcggggagactggcagccccgggcggatgtggcggcctccaccctcgggccccacggcggccccagggcgtgaaggcgacgctcggggcctgaggaagagaagccggcggccagggccaggcgaggcgggaggctgcggccctgaggcgagggggcgcgaggaaagcaggcaaaagaggaggatggtggctcaggcgtctgggaaagagctggaaagtgacaagtcagccaaggaaaaaagaaaagttactgaagcctcaagtgatgatccacagccagggattgacctggtaagaaaggaatcattaaccagttcggaatctttcccaacagtggaatgcagtgaatttcaaagtatggctttcttgcagtctttgggtaaggaaaggttggtagaaggtattaaaagaagaattcgaataaaaaaatttaaaagcttagaaagcccagctctcaaaatgactgaaaataaggctacacaaaatagtaaggttgaattccaagatgaactgtacaagaatactctgaaatattcttgtaacagcttgtcacctggagtagaaaataattccactttaaaattacatgattgcagttgtctttcccattccaaggattgtaatgatgaaaataaccttgcatataaacctgatggaggatgtatgcatgtaccagaaaattcctcaaagtcaaagaaagaaaaccctaggagtcttatagataagactgatccaagcaatattcctcagcttttacaaactgaagaaaacttaatgcgagtaagtcaattattgcttgaagaaaatgattcatacctaagtaaaaataatggcatgttttcctgccttcaaagtgaaaaaaataaacattcaatagaggagagcagtattgggagaaaatccagaaaaaggatgaaggtgtctgaaaaaggaaatggaatggttattgagatgaagttttctaatatgtgtaacaaatctgagctgatgatacaaggaaaccaaacaggtgctgaaggtaaagaaacagagactttagaagctaaaaaaagttctttgaaagttttgagaaaagtaaataataatacactgtcaccgatggatcctttattaagtcttccagaaacagggaaaaaaacaagtcctgaacattatgcaaatgctgtgtttcagaaagcccttgagcaactttcaaaagaagaaacaaagaatgtttcacagcctttaggatgtaccagcatggatccaccagaagattattttaagtcaattgaaaactcattagtgaagtcacttagtgattgcttccctattgaaaagaggtcttctagggaaggcttgaagaatgaagctgaagaatctaaatatagctgtcacagaacaataccaatgactggcaaaagaacttggccttgttattcatgtgctagaatatctgcccagtgttggaaaaaagcttccttgccacaaagttctaggcaagatgattttcttagacatcaaacgaatcaaactcacttaactgactccaaactaatgctacaaagttctgtaacagaaacaaacagtgcatcttcaagtatagaaaaattggattctaatttaaattgtttaccttcaatctctacagtggaacctacttcagtggttataaaggaacctatagtcaatgatgatgaaaaaatgaagtcagaggagctaagcagaagtgcatcagaggtagtttctaatattaccgaagatactccattgtctactgtgactcacaactcaacaggaagtaaaaaaaaagatagagggaatttaacaaaactgaatttgatggtggcttcccaggatggccaggaagcaagtaactctacaggcaaaactattcatcgaaaagcatgcattactaagcaagcactggttgttccagacctagttaagatactgaacacaggacggctgactaattttaaaattcctttacttaagaacaaaacagaaaaaagaaaagaaattaatgccaagtcatcagagagagaagtgtatagtcccctagaacttcttgacagtttatctggagcagaggtaaggcagagtaggactaaagaaaatgctgtcacggtaacttcaggacctcaatctttgagtatacagcatagtgtaattccagtgcaagctagttctgactcattctgcagtaagaattcctgttttattgctccaagctttttaaagcaaggtaataataataaaccatctagccacatctctgcatcaggccatatcatttctaataaggcagctggttctctcacagttgaaaataatacattttcttgtgatcctggatgtatagagaaaaatcctaccttctattccaatgaacaagaaccattcaaagcagtttcctctgaagttagtggtaaaaaaatgtctaagaacttttcagaaattaaagtggggtttccagatattctgaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccagtgaaggggaactctcatttccttcagaggttcccatgataagccaggagcccaatgttgctgaagaacatcaatcggcagactccaagcacatggaacttccagaaaaaaaagaaccaggagatgacttgagagaactgcctgtaccggatcccggatcagtgaagtcagagatctgtgcttccttgtcagcagcaagtgagataaaacatgattccaaagatgcaaacatttccttaggagaagttactcatgaaacttcttcaaatgaaaaaccgggaggcctaagtgaacagacaaaaagttcagacttggacgaaaagtgtagattttcagacaaggtagctattcgagaagaaaaagaaactatttctgaagttttcagaagcgattctaaaaatacagagattatggttggtgaaggtcacttagcagcactagtctccaaacctctgtgcttaccagtgccattgccgcctttgaatcttagtactcatcaggaagacacattactgaatccttggatgaatgatttcagattaccagggaaacattctctcctaaagctgcagaatcctgaaatttgtgaaatatttaagagggaaaaaaatttaggggtgttccagaagccactagggttgacgataccccacagatactgcaaatttcattttaatatgatacgtggctgtgagcgatcacagtgcaagtttgctcatgtgcctgagcaaggggatgaaaaggtttgtatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctacaacgtgcagcaaacatgtttatggaatactacagaaagtttcttccaggtatacactttgatttacaagtattaaatgaccttctaaattctttactcaaacactgtttattgaaagaagtatttcagatcatgaacctctgcataatgattaagatgctgcccgctctgaaaatattactaaaaatatttgagtatgtggcaactatgaaattaaggaatgcggtacctgctttaattgatatgttttgcaagctcgttgaagctgggatggtacttgacctagaacactttaactatattgttaagcttttataccaagtacaggcttccaagcaagaaataacggcagttctggaaatgaaatccaggttacgcatgaggcaatttaaaaagaactggaaatgtgacttggaggcagccttgaatgaaatagagcattgtaaagaaaaaggtgactggaccaaattgggaaatgtataccttaacataaaaatgagctgtgaaaaatttgcagatttccagaggttttgtgcttatattgctgaaatactaacaaaagactgtaaagaagagcgaccaggtgttccattttgtgaatttgctgaaacagttagcaaagatctgcagaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatgtacttctatcacaagcttttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacattttacaagtttaaaaggacttatagggcctgagaagttagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaagcctagatggtgccatttgggtattaagggagtctgagtggatcattaatacaccagtatggccttgcgatcgactggatgtgctcaatcggcataatctgctctgtacaatcgcacatgaaatcttagcgaagagtctttacagacagacatttgaagttttgcagaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagcctactttttaataaacttctagatgcctgtatagaaagcaacagccttggtatgtcatcctctgtagctgaattcatgatttcaaagagcatccctattgatttttcctttcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagagcccactacaaaagtgctctttcactgggttgctacccaccattggaaggaaatttgtaccgaaaacttctactgattccatcctatttgtctgaaattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatgctgcagatagttttaaaaagatctgaagaaaacaaatctcggagcaaggatgattatcaagctgcagtggaaagattaattatggctgctcgtatatcagatccaaagcttttcattaagcacatgaccgtcaatgttaataaggaacaggtttatagtttggaacattgttctgccctgaaatggttgaaagagaatatgaagtgggccggaaaggtttggcttttcaataaccgttagttataaaggcttttttttttttttaagttcaagtaatcattgttgaaaataa

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