2024-11-15 17:50:52, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_214561 1402 bp mRNA linear INV 30-JUL-2024 DEFINITION Strongylocentrotus purpuratus homeobox (H-6 family) (HMX), mRNA. ACCESSION NM_214561 VERSION NM_214561.2 KEYWORDS RefSeq. SOURCE Strongylocentrotus purpuratus (purple sea urchin) ORGANISM Strongylocentrotus purpuratus Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus. REFERENCE 1 (bases 1 to 1402) AUTHORS Tu,Q., Cameron,R.A., Worley,K.C., Gibbs,R.A. and Davidson,E.H. TITLE Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis JOURNAL Genome Res 22 (10), 2079-2087 (2012) PUBMED 22709795 REFERENCE 2 (bases 1 to 1402) AUTHORS Martinez,P. and Davidson,E.H. TITLE SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells JOURNAL Dev Biol 181 (2), 213-222 (1997) PUBMED 9013931 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from D85079.1. On Aug 31, 2012 this sequence version replaced NM_214561.1. ##Evidence-Data-START## Transcript exon combination :: D85079.1, JT104524.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096960, SAMN01103178 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1402 D85079.1 34-1435 FEATURES Location/Qualifiers source 1..1402 /organism="Strongylocentrotus purpuratus" /mol_type="mRNA" /db_xref="taxon:7668" gene 1..1402 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="homeobox (H-6 family)" /db_xref="GeneID:373358" misc_feature 110..112 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="upstream in-frame stop codon" CDS 122..1339 /gene="HMX" /gene_synonym="homeobox; SpHmx" /codon_start=1 /product="homeobox protein Hmx" /protein_id="NP_999726.1" /db_xref="GeneID:373358" /translation="
MDSSRELSGEEPRSPSPRHETSKMRLSPDRPSHHPARPPASLASQPLRPAHYQDDDDSYRTHTPPPSQPRTKGFSIESILSPTDKHRKSPRSPPMSPSSPSMSSNGYSEGPIYGSTRHPLSATVPGLGRAALDELAAHRAAALHIPSAALPFSHLAHNPAFYAWMHGASFLHYHGMPAFNSHPPIAQPLTNSSRLAMAKDISPRPTQSHSSFGEEGGEKDSRGRESPDSEHRRNNGHEEDDDDDDDQSPQKKKKKTRTVFSRSQVFQLESTFEVKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKRQMAAELESANLAHAAQIRAQANLAQVSAVHVHAYAQRMVRVPILYHENHPTTGSSLHSPNILPFPMPYPGSYHQISSSTSSTSSARSPTSTSIVT"
misc_feature 122..475 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 722..898 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 881..1051 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1268..1336 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" ORIGIN
cggccgcttggaaatgctagcttgtatttgaatgtattaatgatttgaattcgtcgtttgaaggttgaagttatcggagaagtatcacttttggctctttcaaacattttgatcgttatctatggacagtagccgtgaactatcaggagaggaacccagatctccatctccacgccacgaaacgagcaagatgcgtctatcacctgaccgacccagtcatcacccagcccgaccccccgcatctctggcgtcgcaaccactccgccctgctcattatcaagacgacgatgatagctaccgtacacacaccccgccaccgagccaaccgagaacgaagggcttcagcatcgagagcattctctcaccgacggacaagcatcggaagtcgccgagatcacccccgatgtcgccatccagtccgtcgatgtccagcaatgggtacagtgaagggcccatatacggctccactcgacacccactatcggcgaccgttccggggttgggacgggcggcgttggatgagcttgccgctcaccgagcagcggctctccatatcccttctgccgcactccccttctctcacctagcgcacaaccctgccttttatgcctggatgcacggggcatccttcttgcattatcacggcatgccggctttcaactcgcacccaccgatagcccagccactaaccaacagtagccgtctcgctatggccaaggatatctcacctcgaccaactcaatcccatagcagcttcggcgaggaaggcggcgagaaagacagtcgtggtcgcgaatcgcccgattccgaacaccgtcgaaataatggacacgaagaagacgatgatgacgacgacgatcaatcgccgcaaaagaagaagaaaaagacgagaactgtcttttcgcgaagtcaggtctttcaacttgaatcgacgtttgaagtgaagcggtacctgtctagttctgagcgggctggactagcagcgaatcttcacctgacggagacccaggtcaagatctggttccagaaccgtcgcaacaagtggaagcggcagatggccgccgagttggagtcggccaatctggctcacgccgcccagatacgcgctcaggcaaacctcgcgcaggtcagcgctgtgcatgttcatgcgtatgcgcagcgtatggtccgcgtaccgatactctatcacgagaatcatcccaccacgggttcgagtctgcactcgcctaacatcttgcctttcccgatgccgtaccccggttcgtatcatcaaatcagctcgtcaacatcgtctacatcatcagcgagatcgcccacgtcaaccagtattgtgacatgaagtgtgacccgttgataacggaacaatgctattcgtatgaagaaggcaactttcccggattct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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