LOCUS       XM_002940960            1461 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis vimentin, gene 2 (vim.2), mRNA.
ACCESSION   XM_002940960
VERSION     XM_002940960.4
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030677.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2016 this sequence version replaced XM_002940960.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..1461
                     /gene="vim.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 34 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100495820"
                     /db_xref="Xenbase:XB-GENE-920288"
     CDS             58..1182
                     /gene="vim.2"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_002941006.1"
                     /db_xref="GeneID:100495820"
                     /db_xref="Xenbase:XB-GENE-920288"
                     /translation="

MRNTSYSQKSLTVNESSRMRGQSSSGHDNLAFSQGQGGIKQTVDEAIPKVFVYRPNEKEELQELNNRFAGYIHKVHSLEQKNKALRTETEELTARLKERGPGISDEYDKEFKELKELIEKLTKEKGMAEIERGNLEEEIDIWNAKCDEELILKAEAEQTLREFRQDVDDATIQKLELERKVEQLIDEIEFLKKLHDEEVADLLRQIEESKVSAELDSSRPDLAAAVKAIRAQIEQEVTKNIQDAEKWYKTKLGSLKGQVSKNEDKMKTIREDISRYSSQVSDLQSEIDSLRSRNEALEKQLEDMEEQHLEQVAALHEIISHLEGQLLETKADLARYLQDYQDLLNIKIKLDAEIAVYRKLLEEEEQRLGIKTES"

     misc_feature    223..1158
                     /gene="vim.2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

ttgtgctattgcctgttcacttctgaaatcacaaaggccaaggtcactataggcaaaatgagaaacacttcctactctcaaaaatctctgacagtcaatgaatccagcaggatgcgcggccaaagctcttctggtcatgataaccttgctttttcgcaaggccagggagggattaagcagactgtagatgaagccattcctaaggtcttcgtttatcggccaaatgagaaggaagaacttcaagagctgaataaccgctttgccggctacatccataaagtccattctttggagcaaaagaacaaggccctgcggactgagactgaggagctgacagcccgcttgaaagaaaggggtcctggcatttcagatgagtacgacaaggaattcaaggagctgaaagagctgattgagaagttaaccaaagaaaagggcatggcagaaatcgagaggggaaatctagaagaagaaattgatatctggaatgcaaagtgcgatgaagagctaatccttaaagcggaagctgaacagaccctgagagaattccgtcaggatgtggatgacgcaaccattcagaaacttgaactggagaggaaagttgagcagctgatagatgagatcgaattccttaaaaagcttcatgatgaagaagtggctgatttactaaggcagatcgaggaatcgaaggtctcagcagaactggatagcagtcgccctgacctggctgcagcagttaaggcaatacgtgctcaaattgagcaggaagtcaccaaaaatatccaggatgcagagaagtggtacaagaccaagcttggttccctaaagggacaggtctccaagaatgaagataagatgaagaccatcagggaggatatcagcaggtactcctctcaagtgtcagatctacaaagtgagattgattccttgaggtcccgcaatgaagctttggagaagcagcttgaggatatggaggaacagcacctggaacaagtggcggccctgcatgaaatcatctctcacctagagggtcagttactagagaccaaggctgacttagcccgctatctgcaagattaccaggatctgctcaacatcaagatcaagctggatgctgagatagcagtctacaggaaactgctggaagaagaggaacaaaggcttggaattaagactgaaagctaggcccacattgagacgactgaagtacaaaaaggtcaaaaccagctccactgtttaatcacaatgaagcaaattggggcgcataaagaataaagactgaacctgcaagtcaacgtccccccgagtgttctaccattctgctacattaaccctttcccatgataccaatgcttgctttatagaggccgtcggggcagcattttccacatttattttcatgcattattgtgcagatgattcaatacattaaacctgcaaataaaaaatgtctgtgcatttgaa

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