LOCUS       NM_204051               2042 bp    mRNA    linear   VRT 14-OCT-2022
DEFINITION  Xenopus tropicalis TGFB induced factor homeobox 1 (tgif1), mRNA.
ACCESSION   NM_204051
VERSION     NM_204051.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Rana AA, Collart C, Gilchrist MJ and Smith JC.
  TITLE     Defining synphenotype groups in Xenopus tropicalis by use of
            antisense morpholino oligonucleotides
  JOURNAL   PLoS Genet 2 (11), e193 (2006)
   PUBMED   17112317
REFERENCE   3  (bases 1 to 2042)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC064716.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC064716.1, CX485589.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..2042
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="TGFB induced factor homeobox 1"
                     /db_xref="GeneID:395014"
                     /db_xref="Xenbase:XB-GENE-853021"
     exon            1..315
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    267..269
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="upstream in-frame stop codon"
     CDS             300..1118
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="TGFB-induced factor (TALE family homeobox)"
                     /codon_start=1
                     /product="homeobox protein TGIF1"
                     /protein_id="NP_989382.1"
                     /db_xref="GeneID:395014"
                     /db_xref="Xenbase:XB-GENE-853021"
                     /translation="

MKAKKGLVPLSGSETEDDDGMDIPLDLSSTAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSRQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRKGAKISDVIQMDSPTGTKPYIPTIDENSFHFTSSGPNQSSGKLLASKLSPPQSLLARPSVICHTTVTSLSDAPFNFTHVLNAGQIPDPQQTEASNLTETSILYHEDTSKLGQNTNAQSGLFNTPPPTPPDHNQDFSGFQLLVDVALKQAAEMELQAKLVA"

     misc_feature    order(405..419,423..425,483..485,501..503,540..542,
                     546..551,558..563,567..575)
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(411..413,420..422,549..551,558..563,570..572)
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    459..575
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            316..542
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /inference="alignment:Splign:2.1.0"
     exon            543..1991
                     /gene="tgif1"
                     /gene_synonym="hpe4; tgif"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gagcgttacactacatctacctctggctttctttaaccttaaactgcctcattgtggcaccacacagaaaagttgaagggagacgggcagattggaacaagacccaggaggaggggggaaagtagaagaagataaaagcaaaaagaaagagcctgttggtgaagtgtaaaagtgaacaccaacacatacatacaaactgaagtcatttagttcggggcatcccgtgtgtgtacattggctcccggacttctctaacgttctgcctctgagctgggatcctccggcggccccacgctagtatgaaagccaagaaaggcttagttcctctatcaggcagtgagacagaggatgacgatggtatggatatcccactggatctttcttccactgctggctcagggaagaggaggagacgtggaaacttacctaaggaatccgtgcagattctgcgggactggctctatgaacaccgctataatgcctatccctctgagcaagagaaagcactgctgtcccgtcagacgcatctctccacactacaggtctgcaattggttcatcaacgcgcgccgcaggcttttgcctgatatgctaagaaaagacgggaaggaccccaatcagttcaccatttctcgaaagggggccaagataagcgacgtgatccagatggattccccgacaggcacaaagccttacattcccactatagacgagaactcctttcatttcacttcgtcaggacctaatcagagctcagggaagttgctggcttctaaactgtctcctccacaatctctgctcgctcgcccttctgtgatctgtcataccactgtaacgtcactaagtgatgcgcccttcaatttcacccatgtgttaaacgctggacaaatcccagacccgcagcagaccgaagcgagcaacttaacagaaacctcaattctgtaccatgaagacactagtaaactgggacaaaacacaaatgcacaaagtggacttttcaacactccgcccccaactcccccagaccataaccaggatttcagtggctttcagttattggtagatgttgctctcaaacaggctgcagagatggagctgcaggctaagcttgtggcctaactttggtttctttttcctttctcctaggagttaaaaactttcaaaacatttcttttggactgcccaggttgctaacagactctctgcattatctgaatctatatatttgtattttttctttttttttttttttttgcacatggaactgtcaagcggaacattcttatcacaaagaagtcttacctttttgaacttggactgctttgtgttccccttcataagaactgtgactcaagcgtttgactgttgagagattctcagttgccatgttatggacattgctttattgcaaagtggccattagcttattcttgcagtgatctagaacagggatgtctaacctgcatcccctccagttgctaaactacaaatacaagttgccacctgcggctagggggctgcaagcaggtcatccttgtgctagaagtactcaggggcgagggagatgatatatcatatacacactgcatttcattcagataaacctaaagttagagctactgtagaaacgacatgcttctattgtttcttggtagataaatgtgagttgtttcccaagattgtgactttttttggtacctttcagactgtgcaatatttagaaaacaaattagaactttttatatcattccagagcaggaaatatgctctcatactgtctacaactagaattttttttttttcccccacaatgtaataaaatgttttgtttaaggtaatatacaaactgtgtttttgttacctgggaatggcattagaatactatgtaactggattctgttcccacctggaatattaactgctatgtaaagatttgtttccaagacctgtattatttttgtatacttttgtaatatagaaaaataacaatgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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