LOCUS       NM_001374744            6628 bp    mRNA    linear   VRT 10-OCT-2019
DEFINITION  Xenopus tropicalis testis and ovary specific PAZ domain containing
            1 (topaz1), mRNA.
ACCESSION   NM_001374744 XM_012964409
VERSION     NM_001374744.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 6628)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AAMC03023896.1.
            
            On Oct 10, 2019 this sequence version replaced XM_012964409.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00862000,
                              SAMN04027313 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2094              AAMC03023896.1     62522-64615
            2095-4183           AAMC03023896.1     68448-70536
            4184-4251           AAMC03023896.1     76730-76797
            4252-4373           AAMC03023896.1     78753-78874
            4374-4414           AAMC03023896.1     80449-80489
            4415-4524           AAMC03023896.1     81195-81304
            4525-4613           AAMC03023896.1     81895-81983
            4614-4739           AAMC03023896.1     87037-87162
            4740-4803           AAMC03023896.1     90274-90337
            4804-4955           AAMC03023896.1     94452-94603
            4956-5048           AAMC03023896.1     97197-97289
            5049-5164           AAMC03023896.1     99275-99390
            5165-5231           AAMC03023896.1     105235-105301
            5232-5406           AAMC03023896.1     107457-107631
            5407-5507           AAMC03023896.1     109536-109636
            5508-5673           AAMC03023896.1     110414-110579
            5674-5838           AAMC03023896.1     110965-111129
            5839-6042           AAMC03023896.1     113148-113351
            6043-6226           AAMC03023896.1     115286-115469
            6227-6628           AAMC03023896.1     123758-124159
FEATURES             Location/Qualifiers
     source          1..6628
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..6628
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="testis and ovary specific PAZ domain containing 1"
                     /db_xref="GeneID:100380130"
                     /db_xref="Xenbase:XB-GENE-5887135"
     exon            1..2094
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    729..731
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="upstream in-frame stop codon"
     CDS             777..6467
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="NP_001361673.1"
                     /db_xref="GeneID:100380130"
                     /db_xref="Xenbase:XB-GENE-5887135"
                     /translation="

MSMLHSRKIKLVQPNRSESSSFAKICDEADTEKSSSVLISPALSLQYSSKAIDQDRSVKNLSGRNPKAISGVNEPCAIQQCGNIAVSTESDFIRMNDTRKARLALSDPVLASNDSGESINVSNLPSCQVKRRTRRKATDLRGAESIEKEKCGSLVVNQEAAIVNTDTTVPLDIENVYSPTHMLNQRGLLKKIGKRPTIKKEDVSSVGDRQRCLKLAGKQSGKKLQSEQSVVCGKGKTQECVQIIGKKRGRRAKTDQSSECGISEIQQRKKSRKKVKTDKSDVCCSGETLKYVNKIKRGRKLKTDHKVVSSKGETQECVKLTDMNQKPKTECFAVCGTEETQACVKPLGKKKGRILGNSVGKNKINAGCYSELDKMRTVYVRVQRLSLNKIPQSAGISTEHLRSVLLLKSEYRQECGEARTEERNDATDVTFLKKNLRSPRQQKCCGFPCVSEHKRKKESAQQKTLCSTHNCYFTVTDPAHTVNGITCMQNPLLETANNRKSKCSYGGSQSFLNPVVKLHNCSNMKRLIRCSNLRVSSSKTENTCPAATVKELDPQKQLPCSVNTVNSVISTDSTVGGNHSKELESIAHGLANRKIKRILKVKWDFGKKIRNSATCSTERTQEDSAISVKQKTGDLKYSGNPTVNTDSSDPCIGTLEKIIDEMNNNKSDSVNFNLKDALCDQSTSQNKKESYDCLPVQCRTTQLPFMVSECERKDRESLDIECSALIRMSANESVVDDYSDFSLTEENVNFVNNNNINEHTEECKTCSCQRTIPFTGKTIWKCSCARTCVWAFPRKRTSSLPSTDILGFDSELSFAPYSTNIKSLFQANEAEPLQSTTDDTDSDGICKKLKLDFISENDALILKDIDDDILSHPPTETFELPNTVIEKICNITENVYSLGEVEDMYKNLDGWPCSSTIIQNTINSLPLPLPNNDKSEHFTTSGTYSEIEPTVKTVEEMALSSSFENSDPSVCSRDSSTEPENSSETVLKSTQYESPIRDCLDKHKKNTNVEEVLSFFDCLHETTMDNACLAEENCTRQINNTGGPLDDSHLTLSHVESPKKSKLVEYKSNLDVIKAYEEDVLFLDVVPDDPELFGTPEDPYISPICNADNKENNKRNNLSALMCNLQEQESAHINESTNDASPEENVEERSTYFAKVITDLEVNDDPLIIHNTLEKNSEDFYDGGQFDFEAFRDLDADKEIKYAEKNSSESGSSFEESLSKDTSPGSSHSNSRRWRRDPSHTYKPMHWMNDFRYSGKCMGLTDVITLDQKEQRNIDNLFYDFTPIQKTFLPIRYCKYFFNTFRGCIKPDCMYQHVPFQRDEKVCMEVIHKLVNENHTTLLKRAVWIFTAYYRMYMPGVHYDSNLLTKMLRALYVRQMWGDVFQLLETGANVKILPSSEMLIRLFENIGSTGLTAAVPSLVDVFCKLVEAGMMMKPEQINMLITTLNNLQATKNYISVILDIKTRIEMQLSEKNWLCNLDIAVAEVGHCKEKNDWKKLGTLYLNLRTGCENVTDLKKFSNCIVGALQKVPRNDKSEIPYCDFADTVYKDAQLSEIDKNILGRIGISIMYHYYRNKQSQKGKRVLRKLQEMQINFTVLKGLTGEESKATRCQVVNTAVEIFLNCEYLNGALGVLRESEWIINTQVWPCERMDVLKRHNLLCTIAQKTLNKNMFDVCLEVLQNLPGLQCSLTDVDVSQYSLLFNKLLSSCIENNTLGVSSTVIDFMIAKKIPLDFFLLRALITSLGRSCLWLRARELYKCAVLLGCYPPMEGNLYRKVLFIPSFLTEIEMLLSIEIFMVSNASSIQSPGGSHQTLQIILKRCEEERVPNKDYQRGKASYQDAVDRLIQASRLSTPRLFIKHLTVNNANEQVYILDYGSSLKWLHENMKWAGKVWLFQGKI"

     misc_feature    5226..5753
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
     exon            2095..4183
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4184..4251
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4252..4373
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4374..4414
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4415..4524
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4525..4613
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4614..4739
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4740..4803
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4804..4955
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            4956..5048
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5049..5164
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5165..5231
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5232..5406
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5407..5507
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5508..5673
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5674..5838
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            5839..6042
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            6043..6226
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            6227..6628
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcattaacgtgagagaagcgtagtatgccgcgcaggcggagctgaatttgcgacttccggaagcgcgccgaatgtgggtgttcctgtagaaggcaggccgcggaattccgttgcggagaattatttacagagtgggagctcgggtttggtgaatgtgtaaatcaaactctattggattgcacacattgtacagggggtggttaaatgctcagggccagagatttaaggctttgctagaagttaagcttgatgtttgtttttattgcgttggttaactgagttttatggtgtgccgctagatcctatttatttggctagtgtgttttctttttttgggcctgtggtttattatgacctttattaatgagtgtaatgcaggtgtgaatcaaccctacgtggtgagtttatgtgagcagtaggtaacataacttcatattacatttgttttggacttaacatgtgctcttttggcacgttaacatatttataacttgcatcgcatgtggcttttctgcaggataataatagtgtaaagtgatttcactaaagcacagatgtttttttacacattgtaaatggcaagggtttagcttgatgttttctcttgggttgttttaaacttttgttgtccttgcatgtctagttatatgcttatttggtattaagaaacattttcagaggtagtttgtgtttgtaaagtagtataaaaagtaaaaatatttgggcctagaaagtgattttttttctatcatttttctatgtaaacatacctctaatgagtatgttgcactctagaaaaattaagctagttcaacctaaccggtctgaatccagctcatttgctaagatctgtgatgaggctgatactgaaaaaagtagttcagttcttatcagtccagctctctctctacagtattcctcaaaagccattgatcaggataggagtgtaaagaatctgtcaggtagaaacccaaaggccataagtggtgtgaatgagccttgtgcaatccagcaatgtggaaatatagcggtgtctacagaatctgactttattagaatgaatgacacaaggaaggcaagactagcactttcagatccagttcttgcttctaatgactctggagaaagtattaatgtttcaaacttgccgtcttgtcaagttaaaagaagaaccagaaggaaggcaactgatctgcgcggtgcggagtcaattgaaaaagaaaagtgtggaagtttagtagtaaatcaggaagcagcaattgtgaatactgatactactgttccactagatattgagaatgtttacagtcctactcatatgctaaatcaacggggattgttgaaaaaaataggaaagaggccaacaattaagaaggaagatgtgagtagtgtaggagatagacaaagatgtttaaaactagcaggaaagcaaagtggaaagaaactgcaatctgagcaaagtgttgtgtgtggcaagggaaagactcaggaatgtgtacaaataatagggaaaaaaagaggaaggagggcaaaaactgatcagagtagtgagtgtggcataagtgagattcagcaaagaaagaaaagtagaaaaaaggtaaaaactgataagagtgatgtgtgttgttcaggagagacattgaaatatgttaataaaattaaaagagggaggaaactaaaaactgatcataaagttgtaagtagcaaaggagaaacacaggaatgtgtaaaattaacagacatgaatcagaaaccaaaaactgaatgttttgctgtgtgtggcacagaagagactcaggcttgtgtaaaaccactgggaaagaaaaaaggcaggatactaggtaatagtgttggtaaaaataaaattaatgctgggtgttattcagaattagataaaatgcgtaccgtatatgttagggtacagcgattgtcattgaataaaattccccagagtgcaggaatctccacagaacatctgaggagtgtgctgcttctgaagtctgagtatagacaggaatgtggggaagcaagaacagaagagaggaatgatgctacagatgtgaccttcttaaaaaagaatctcaggagtcctagacagcagaaatgctgtggattcccttgtgtttcagagcataagaggaaaaaggagagtgcacagcagaaaactttatgttctacacacaactgttatttcactgttacagatccagcacacacggtaaatggaataacgtgcatgcaaaatccattgcttgaaacagcaaacaatagaaaaagtaaatgttcatatggtggttcccagtcttttctaaatcctgtagtgaaattgcataactgcagcaacatgaagaggcttatacgttgctcaaatctgagggtaagcagttccaaaactgagaatacatgtcctgcagcaacagtaaaagaacttgatcctcaaaaacaattaccttgttctgttaacactgtaaattcagttatcagtacagattctactgttggaggtaatcattccaaagaactggaatctattgcacatggcttggcaaataggaaaattaaaagaatattaaaagtaaagtgggactttggaaaaaaaataaggaattctgcaacatgctctacagagcgtactcaagaagactctgcaatatctgtcaaacagaaaacaggagacctaaaatatagtggtaatcctactgtcaacacagactcatcagatccttgcattggtactttggaaaagattattgacgagatgaacaataataaaagtgactctgtaaattttaacttgaaggatgccctttgtgatcaaagcacaagtcaaaacaaaaaggaaagttatgattgccttccggtacaatgcaggactacacaattaccgtttatggtttcagagtgtgaaagaaaggatagggaatcccttgacatagagtgttctgcacttattagaatgtctgcaaatgagtcagtggtcgatgactattcagatttttcacttactgaggaaaatgttaactttgtaaataataacaatataaatgagcatacagaagaatgcaaaacctgttcctgtcagagaacaatcccatttactgggaaaaccatctggaaatgttcttgtgcaaggacgtgtgtatgggctttcccaagaaaaagaacttcctctttaccaagtacagatatactgggatttgactctgaattgtcttttgccccttattccaccaatataaagtctttatttcaggctaatgaagcagagccattgcagagcacaactgatgacactgacagtgacgggatatgtaaaaaactaaagttagatttcatttcagaaaatgacgctcttattcttaaagatattgatgatgacattttgtctcaccctccaacagaaacttttgaactacccaatactgtaattgagaagatatgtaatataactgaaaatgtttactcactaggtgaagttgaagacatgtataaaaatttagatggttggccatgcagttcaactattattcaaaatactataaatagtcttcctctcccgctgccaaacaatgacaaaagtgagcactttaccacttctggcacttattctgaaatagaacctactgtaaaaacagttgaggagatggccctgagcagttcttttgaaaactctgatccaagtgtttgttccagagacagctccacagaacctgaaaacagttcagagactgtgctaaaaagtactcaatatgaatctccaatacgtgattgtttagacaagcataaaaaaaacactaatgttgaggaagtgttatccttttttgattgtttacatgaaactacaatggataacgcctgtctagctgaggaaaattgcaccagacagattaataatactggtggcccattagatgattcacatttgacactaagccatgtagaatctccaaagaaaagcaagcttgtggaatacaaaagtaatttagatgtgataaaagcttatgaagaagatgtactgtttttagatgttgttccagatgatccagagctttttgggactcctgaagatccttacataagtccaatttgtaatgctgacaacaaagaaaataataaacggaataatctgagtgcattaatgtgtaaccttcaggaacaggagagcgcccatatcaatgaaagcacaaatgatgccagccctgaggaaaatgtagaagagagaagtacatattttgcaaaagtaatcactgatctagaagttaatgatgatcctctcatcatacataacactttggaaaagaacagtgaagatttttatgatggtggacagtttgattttgaggcgttcagagatcttgacgcagataaagagattaaatatgctgaaaagaattcatctgaaagcggaagcagttttgaagagtccttgtccaaggatacttctccggggtcctctcattccaatagccgtcgttggagaagagatccctcacatacctataagcctatgcattggatgaatgatttcagatactctggaaaatgcatgggattgacggatgtgattactttggatcagaaagaacagaggaatattgataatctcttttacgattttacacctatacagaagacctttttgcccattagatactgcaaatatttttttaatactttccgtggatgcattaaaccagattgtatgtaccagcacgtaccattccaaagggatgaaaaggtgtgcatggaggtgattcacaaacttgtgaatgaaaatcacacaacattattaaaacgtgctgtttggatatttactgcctactacagaatgtatatgcctggtgttcattatgactcaaatctgctgaccaaaatgctccgtgccttgtatgttcgtcagatgtggggagatgtatttcagttgttggaaactggtgccaatgtcaaaatattgccctcctctgaaatgcttatcaggttatttgaaaatattggctctacgggattaacagcagctgtacctagtttagtggatgtattctgcaagcttgtggaggctggaatgatgatgaagccagagcaaatcaacatgttaataacaacactgaataatctccaggcaacaaaaaattatatcagtgtcattttagacataaaaacaagaattgaaatgcagctttcagaaaagaactggctgtgtaacttggatatagcagttgcagaagttgggcattgtaaagaaaaaaatgattggaagaaactaggaacattatatcttaatctgcgtacagggtgtgagaatgtgactgatcttaagaagttttctaattgcattgtgggggcgcttcagaaagtgccaaggaatgataaatctgaaattccatattgtgactttgcagacacagtgtacaaagacgcccaactaagtgaaattgacaaaaacattttgggaaggattggaatatccatcatgtatcactattacagaaataaacaatcgcaaaagggaaagagggtgctcagaaaacttcaggaaatgcagattaatttcacagtcctaaaaggactcacaggggaagagagtaaagctacgcgctgtcaagttgtgaacacagctgtagagatcttcttgaactgtgaatacttaaatggtgcactgggggttctacgagagtcagagtggatcattaacacacaagtgtggccatgtgaaagaatggatgtgctgaaacgacataacctgttgtgtacaattgcacagaaaacactgaataaaaacatgtttgatgtgtgtcttgaggtccttcagaatctgccaggactgcagtgctcattaacggatgtggacgtctctcagtacagcttgcttttcaacaaacttttgtcatcctgcatagaaaataatacacttggtgtatcctcaactgtgatagattttatgattgcaaaaaaaataccacttgactttttcttactgagagcactaatcacatccttgggacgaagctgtctatggctcagagcaagagaactttataaatgcgctgttttgttgggttgctacccgcccatggaaggaaatctgtatcgtaaagtgctcttcatcccctcattccttactgagatagaaatgctgttatccattgaaattttcatggtgtcaaatgccagtagtattcagtcaccaggaggcagccatcagactctgcaaatcattctcaaaagatgtgaagaagagagagttccgaataaagattatcaaagaggtaaagctagctatcaagatgcagtggaccggctgattcaggcctctaggctatcaacaccaagattattcataaagcacctgactgtcaataatgccaatgaacaggtttatatccttgattacggcagctctctcaaatggttgcatgaaaacatgaaatgggctgggaaagtatggctttttcaggggaaaatataacttgatatcaggaggtttaactaagcaagtaatgaaaattttaaattaaagtgtctgtttaatttgttttattaatgtgtattttccacttttattgtccttatctgttgacaaaatggtttaagactgtacacaaaataaaatatatagtataaggaaaa

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