LOCUS       NM_001134812            2220 bp    mRNA    linear   VRT 05-FEB-2024
DEFINITION  Xenopus tropicalis empty spiracles homeobox 2 (emx2), mRNA.
ACCESSION   NM_001134812
VERSION     NM_001134812.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169182.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169182.1, DR876496.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..2220
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /note="empty spiracles homeobox 2"
                     /db_xref="GeneID:100038069"
                     /db_xref="Xenbase:XB-GENE-481028"
     exon            1..694
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /inference="alignment:Splign:2.1.0"
     CDS             304..1047
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /codon_start=1
                     /product="homeobox protein EMX2"
                     /protein_id="NP_001128284.1"
                     /db_xref="GeneID:100038069"
                     /db_xref="Xenbase:XB-GENE-481028"
                     /translation="

MFQPTPKRCFTIESLVAKDSPLPVSRSEEPIRPAALSYANSAPMNPFLNGFHPTGRGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPTSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTSAESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEEEGSDSSQKKKGAHHINRWRLATKQASPEEIDVTSDD"

     misc_feature    751..921
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            695..879
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /inference="alignment:Splign:2.1.0"
     exon            880..2208
                     /gene="emx2"
                     /gene_synonym="emx-2; xemx2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtttagggcacatccatggatcgtcttcggacttgctaaacgcatcgcaccgtgtctgttgcgacggaggaagagtccgcggagttggggggagtcgcaccgttgccgactactgtcgctcgcccttttcaaatcactgccagagactgcgatcggccgaggattcttctaaagttggagattccgctggagattttgcgcttggttttagccccctctccgttgcggtctgggcccttctcctcccccccacccctgaactactggctgacacgggaggggatcggggttcggggggcaccatgttccaacccaccccaaaaaggtgctttactatcgagtccttggtggccaaagacagtcccttgccagtctcccgttccgaagagccaatccgaccggccgccctcagctatgccaactcggcccccatgaaccccttcctcaacggcttccaccctacgggcaggggggtctattccaacccggacttggtcttcgcagaggccgtttctcacccacccaacccggcagtccctgtgcaccctgtgcccccaccccatgccctggcagcgcaccccctgcccacctctcactccccgcaccccctttttgcatctcagcaacgggacccctcaactttctacccttggttaatacatcggtaccggtacctgggacacagattccaagggaacgacacaagtgcggagagtttcctcctacacaatgcactggcccggaaacccaaacggatccgcacagccttctccccgtctcagttactgcgcctggaacacgccttcgagaagaaccactacgttgtgggcgcagaaaggaaacagttggcgcacagtctcagcctcaccgagacccaggtaaaagtttggtttcagaacagaaggacaaagttcaaacggcagaaactggaggaagagggttccgactcgtcgcagaagaaaaaaggggcccatcacatcaaccgatggaggctcgccaccaagcaggccagtccggaggagatcgacgtcacctcggacgattaaccattaagcacttgggacttccacagacttttgctttcaattaactttcaaacgaagaaaaacctaaaagtgtttgagctcccagggagtcgggccggactgagctcagaaccagaactcgcaaggcggaaagcggagaagacgggcagccccccccccccggagtggcctgggcttcaaggtcaaccagcaggggccaaggtcacccacaggtattcagtgaataaggactgcgttatcgtatcgcaagatttcgttcttttgcacttccaacatttctttttcaaaatgacccccccaaacagccagaacccaccaaacatgatagaaaaaaaccttttttattattattattccataaaacttgaaatgcatgacaaatcgccacataggtgggtttagatggctgcacaacctccataaaacaacccccccccctcctaatttaaaagtagttgtttcggcattagtgtgcccttccttgctggcagagaccacctctcaccctttcggcgggggcggggccatcttcctacagattcctgacgtcatgaagggtaactttttggtgcaataagatgactgaaaacgcagtttggcagcaactgaaatctttgcacataaagactgcgccaaccatggaattgtcggtgctggggagggtgaaagggttaatgtaggagatcaggaatgtgaatttgctcccaaaataattcgccattttattgattatacagaaatccctgggggttccagctgttcagttaaaaaacaaaatatttttaatgctgcagaaataaacagaggggagtgtttgtgcggatatgaagcatttcccacggtgtctggtgctttaacccccacagactcgtcgcaaggagtcgccaaaatgacgttttcgtggatcattttgcagaactgatcacttttttggacagtaattcggaagcactgagatctttctttttttctgtttcacaatagtaaaacgctactaaatatggacaacaacaacaatatcctaacgtttccctaatgtcttctattaccagattgtacatatttttgtgtttgtgttaatttgttagaattctaacacactatatacttccaagaagtatgggaacttgtcaatattttgtcaataaagatttatccaaaaaaaaaaaaaaa

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