LOCUS       NM_001097259            2718 bp    mRNA    linear   VRT 02-FEB-2024
DEFINITION  Xenopus tropicalis POU class 3 homeobox 4 (pou3f4), mRNA.
ACCESSION   NM_001097259
VERSION     NM_001097259.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC127328.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC127328.1 [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /map="8"
     gene            1..2718
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="POU class 3 homeobox 4"
                     /db_xref="GeneID:100036711"
                     /db_xref="Xenbase:XB-GENE-479667"
     exon            1..2700
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..1099
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="POU 2; XlPOU 2"
                     /codon_start=1
                     /product="POU domain, class 3, transcription factor 4"
                     /protein_id="NP_001090728.1"
                     /db_xref="GeneID:100036711"
                     /db_xref="Xenbase:XB-GENE-479667"
                     /translation="

MATAASNPYSILSSSSLVHDSAIMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDANPWSTSLGSSPLDQQDIKPGREDLQLGAIIHHRSPHVTHHSPHTNHPNAWGASPAHNSSLTSNGQPINVYSQSGFTVSGMLDHGGLTPPPPSGTTQSLHPVLREPVDHGDLGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQATICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDPQQHEVYSHSVKTDTSCNEL"

     misc_feature    308..406
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="propagated from UniProtKB/Swiss-Prot (A1L0Z1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    443..589
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="propagated from UniProtKB/Swiss-Prot (A1L0Z1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    569..793
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    848..1018
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1010..1096
                     /gene="pou3f4"
                     /gene_synonym="brain-4; brn4; dfn3; otf9; pou2; XlPOU-2;
                     XlPOU2"
                     /note="propagated from UniProtKB/Swiss-Prot (A1L0Z1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
ORIGIN      

gggatccgcagcaagcatggccacggctgcctctaatccctacagcattctcagctccagctccctggtccatgactctgcgatcatgcagcaaggcagccctttcaggaatccgcaaaaactactccaaagtgactacctgcagggagttcccagcaacgggcatcctctcgggcaccactgggtgaccagcttgagtgatgccaatccctggtctaccagcctaggcagcagcccattggaccaacaggatattaaacccgggagagaggaccttcaactgggggccatcatccaccacaggtcaccccatgtcacccatcactcgcctcataccaatcacccaaacgcctggggggccagcccggctcataactcctcgctaacctccaatgggcaacctatcaatgtctactcccagtccggctttacggtcagtggcatgttggaccatggggggctgacaccacccccaccatcaggcaccacgcagagcctgcaccctgtgctgagagagcccgtcgaccatggggacctgggctcccatcactgccaggaccattcggacgaggaaaccccgacatcggacgagctggaacagtttgcaaagcagttcaaacaaaggcggatcaagctgggcttcacccaggcagatgttggcttggctctggggacactctatggcaatgttttctcccaagccaccatctgcaggtttgaagccttgcagctcagttttaagaacatgtgcaaactgaaacctcttctaaacaagtggctggaagaggcagactcctccacaggtagccccaccagcattgataagatagcagcccagggtaggaaaaggaagaagaggacctctattgaggtgagtgtgaaaggagtgttggaaacccatttcctcaagtgtcccaaacccgcagctcaggagatttcctccttggcagacagcctgcagctagagaaagaagtggtccgggtttggttttgtaacagaaggcaaaaagagaaaagaatgactcctccaggagacccccagcaacacgaagtctattctcacagtgtgaaaacagacacctcctgcaatgagctttgactgaggcaaggctcacataagtcgggactgaaggaaactggatttttaaagggtttctaacttatattttggcggaacaaaatacaaaaaatgtgacttaggagctaaacgttccaaaaatatcctgggcaatatataactgacaattacatactgtttactctaaacaaggttcgttctttttggtgccctaccagaaaggagacatgcgtgcctctgattaacctcccagcgccttggttccatcagctaaatttcaggtgattttgtttcacaatagagtagatttatttgcatatggagattatctgggatttttttttaatgtctaaggtgttttactacagcctgtacacaatatttgtgacaaaaatacattgtgttctccaatcagccctatggataatcatcattcctcattttatttgatttttttttctgctgttttgttttttttgcagtgttagaaggtgtacatggatatatctgtaactagttaccagaaccatggagcgtatatattcatataaatccttatttaaccaactggtggatataatcatttctgcatgtcatttattggacagttatttaagactttccagtcttaccatatcattatgcatttatatatgtcttttttgcctcttgctttttcttcttcttttaataaactggcactttccaaaaaaaaggatagaaaatagacaaagaaacatgcagatgaacatgtattgcagtagcttttgatgacaagtaataatgtggtatgttattacctgctaagggttagtagggcttagggatggtggaaggtactgtatgtagtaaaacaccagtctatatggtaaatcaatctccactttgaggtttggcaaatgtgctcgcttcatcatcagcctgtagattggagacatccatttcattttctgtgcattgtgttcactgtgagcagccagaggggatctaagctgagcctgacaggcaccactgatgctgtgtccctcagtgagcgacaactgtgaggggaaggcttgcacttcacaggtcagagatttgcactaaacatatactcctagctatattatcataacaatggcttctatatttgtatttcagccacttttaccatcttttattttttgttgttgtcaggcagaacattagctttcttgctttatggggtgtctagcaaagtatcatgcatttctattctatgcatagaatagaaattatttgtatactggggcctaatttttactccagcacagagctattacctatatacagacacactttataaaacataataacactggggcttctttcagtgctacttttatgtagtaatagtcaatcagatacacacatttccctgtgtgtgtatatacatatacatatatatatatacacacacacagccacatacacatacacatacacacagcctttcatatctgattctactgtttaaagttgagatcccaggctacccttacatactctggccctgcagttccagaaagcagaatgcacttccacctaattccaccatttctttaccttcccatattcaagtcttctctatttggagctataggactagttctagatcgcga

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