LOCUS       NM_001037252            1601 bp    mRNA    linear   VRT 14-OCT-2022
DEFINITION  Xenopus tropicalis msh homeobox 1 (msx1), mRNA.
ACCESSION   NM_001037252
VERSION     NM_001037252.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Rana AA, Collart C, Gilchrist MJ and Smith JC.
  TITLE     Defining synphenotype groups in Xenopus tropicalis by use of
            antisense morpholino oligonucleotides
  JOURNAL   PLoS Genet 2 (11), e193 (2006)
   PUBMED   17112317
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR855795.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR855795.2, BC062514.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..1601
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /note="msh homeobox 1"
                     /db_xref="GeneID:394692"
                     /db_xref="Xenbase:XB-GENE-490378"
     exon            1..442
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..867
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /note="msh homeo box homolog 1"
                     /codon_start=1
                     /product="homeobox protein MSX-1"
                     /protein_id="NP_001032329.1"
                     /db_xref="GeneID:394692"
                     /db_xref="Xenbase:XB-GENE-490378"
                     /translation="

MAPALLMATYQPGVKVEESPSVNKMQTGLKVALGEDKPKVPGILPFSVEALMADRKPGRERDLSSPTGSPLAGTSHSPRVGSLAPGETPNSPISIGNRFPVGGIMKLPEEALVKPESPERSSWIQSPRFSPSPTRRMSPPACTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAFGISFPLGTPVPTASLYGTSNPFQRPALPVSPMGLYTAHVGYSMYHLS"

     misc_feature    <202..>816
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /note="104 kDa microneme/rhoptry antigen; Provisional;
                     Region: PTZ00449"
                     /db_xref="CDD:185628"
     misc_feature    490..660
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            443..1584
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1583
                     /gene="msx1"
                     /gene_synonym="hox-7; hox7; hyd1; msx-1; msx1-a; msx1-b;
                     Xhox-7.1; Xmsx-1; xmsx1"
ORIGIN      

cactcgcccgctgtaacttcccagctcggatatctctgtatggccccggctctgcttatggctacttaccagcccggggtgaaagtagaagaaagtccttctgtgaataagatgcaaaccggcctgaaggtggccctgggcgaggacaagcccaaagtgcccgggatcctgcccttcagtgtggaggccctgatggccgataggaagcctgggagagaaagagacctgtccagccccactggatctccgctggcagggacttctcacagccccagggtgggctctttagcgcccggggagacccccaactcccccatatccattggaaaccgcttccctgtggggggcatcatgaaactgccggaggaggcgctggtcaagccggagagcccagagaggagctcatggatccagagccccaggttctccccttccccaacaagaaggatgagtccccccgcctgcactttgagaaagcacaaaaccaacagaaagcccaggacccccttcactacatcccagctgctggccctggagaggaaattcaggcagaagcagtatctgtccatagccgagagggcagagttctccagctccctcaacctcacagagacccaagtgaagatctggttccagaacaggagagccaaagccaaaagactccaagaagcagagttggaaaagctcaaaatggctgccaaacccatgctcccccctgcatttggtatctcctttcctcttgggactccagtacccacagcctccttgtatgggacctccaaccctttccagaggccggctctgccagtgtctcctatgggactttacacagcccatgttggatacagcatgtatcatctctcctaagacttggtcgcactccattgggactatgggcaagaagacttgagtgaattttctgtgcacccctatattttttcactatttatgagttcctagggaattgaattgtagaaatactatgtcacttcaatatgcctattgttgtcatcttgttagctgtgtctaattagtagtccatgagtttcaggtgtcaaccagcttcccaagccctaattgggcagccttagtgctatcccagaaccgagggaatatctgtaacattgaaagcatccactgcttcaggagttatcccagattgcatggaaaggcttcccagcaaaggtggtgagcagtgtaaatatattataatatggtacaagcaggattgggagcttaatcgatttgctgcagaagggatcagtagtcccctgacccaaactggggtaaggataaatagcttaatttggggtgggacctgctgctgtgtaactttaggtttggggagcttggcacctccacagaatgacaagattgataaagggagtaaaatatctcttacatataagagatacatgtaatatagtattgaaactttcacttaacagcactgtctgtttgcgtttcgttattgcaataatccctttggaagggattgtatgtaatatgtaatatattgtatatttgaaatttattatcatttatattatagttatatttgttaaataaattaattttaatgcaaaaaaaaaaaaaaaaaa

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