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2024-11-23 01:22:21, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus uncharacterized LOC134485238 (LOC134485238), transcript variant X1, ncRNA. (1638 bp)
COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:134485238" ORIGIN // ggaaaagcacacagagtttgggaaagggcagccttttctctgtgcccctgggtaggatgggggctttccaccatgcaggcagggtctagagtagaatgcaagccactgaggcacaggggcccagccacctccttgtcattgccacatcgtagccaaaagtcaaagaaatccctccacgtggggcttagtcacccgtctctttactgaatgaaggtcatcctgacctgactcacagcctctctcatccctaacagacttccctccacctaggctcaggtcagcaccttctcccccagcgccaattcaaggaatacactcttccagtggcctctgtggtcacctttggccactgtactgctctctgggcaggcccctcagtttggcgatgtggttctagagaagaggagggggacacaggtttctgccactctcgcatagtcagtgatgttgtcacagcaagctggggacaagtcatccctctggcatctgcacgctcccacctctgaatggggatagcag...
position 212
XR_010063264.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC134485238 (LOC134485238), transcript variant X2, ncRNA. (1875 bp)
evidence [ECO:0006239]" /db_xref="GeneID:134485238" ORIGIN // aacaatggcccctgggaaaagcacacagagtttgggaaagggcagccttttctctgtgcccctgggtaggatgggggctttccaccatgcaggcagggtctagagtagaatgcaagccactgaggcacaggggcccagccacctccttgtcattgccacatcgtagccaaaagtcaaagaaatccctccacgtggggcttagtcacccgtctctttactgaatgaaggtcatcctgacctgactcacagcctctctcatccctaacagacttccctccacctaggctcaggtcagcaccttctcccccagcgccaattcaaggaatacactcttccagtggcctctgtggtcacctttggccactgtactgctctctgggcaggcccctcagtttggcgatgtggttctagagaagaggagggggacacaggtttctgccactctcgcatagtcagtgatgttgtcacagcaagctggggacaagtcatccctctggcatctgcacgctcccacctctgaatggggatagcagcctgt...
position 226
XR_010063265.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus NudC domain containing 3 (Nudcd3), transcript variant 2, mRNA. (3589 bp)
cgggcagctgcgaggagtaaagccatcctcactgggcacagtgcttccctgaatagaaatgaggttccgttactaaggaaggaaagggatataaatgctggtgagtcatcggcacagatcgggggatgctgaggtaagtttattcacactgagggtgaagtttttctgtgaggacattttgggagcactgttcagtcagtgacagtctggggtccctctgggaaattattatgttctgggaccaggcagataaaagaggacctggaaaatgaaagtgtatccaggaaatgatgaggtcacagtgaccttgtagagggcacctaattctgacccaatgaatggttcagagtgactttctaaaccactgagaaaagaggccaggaggcaggtgctcactttagcagtgcttatgccctgtcagtaagtagaaactggctgcaaggtcaggtgtcccaacctgtcgggaggtgggacctcataggaacctaagatcttgacatttggtatgttggtgacaatgtgggaagccctgggatgagagggaacatccttgcaggacgcctgcaggtggaccacagacacacctgggtacctcaggag...
position 1194
NM_001103362.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC102551617 (LOC102551617), ncRNA. (4577 bp)
cttaggagaaatttctagatagtacatccagaaatctttctttgcccgagtcagtcttctgctagtttttctggaaagactctgaacaatagtaagtagtatgataatggacaatacccttctcattactcccctagcccctgtgagcatcagctgtcccttacagggagttgaatatataatgttctgcgataactttaaaaaggaatgcaagaatgattttgctttttgcccgtgctttcaatacttcctcttaagcatagttcatatcatagatggaattcttttactacaggtcattatgacctgcaaggcaggcagagggtatttgtcgtgtaaatggaaggctcccaatatgaagtttcagtatcgctgtcagcaaaggatacctatttcccaagttcactggctgtagaaagaaccagattccctttaggggcaactcatcacagtattatacctttcgcaggaccatagacacttgtcttctctgacatggaactataactatatgtacttcaaaattttaccatgttttccctaatgtctaaagttcctaagaggacgataaaagaactaggacactctgttcatcttttc...
position 2167
XR_362411.5 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X6, mRNA. (7573 bp)
ggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgag...
position 3735
Synonym: SATV; SIAT8-E; SIAT8E; ST8SiaV
XM_039097015.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X4, mRNA. (7745 bp)
ggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgag...
position 3739
Synonym: SATV; SIAT8-E; SIAT8E; ST8SiaV
XM_039097013.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), transcript variant X4, mRNA. (10113 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 6960
Synonym: RGD1310754
XM_039106457.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), transcript variant X3, mRNA. (10457 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 7304
Synonym: RGD1310754
XM_017592182.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), transcript variant X2, mRNA. (10458 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 7305
Synonym: RGD1310754
XM_039106456.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), mRNA. (12584 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 9431
Synonym: RGD1310754
NM_001419547.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), transcript variant X1, mRNA. (12666 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 9513
Synonym: RGD1310754
XM_008762075.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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0.000 | 0.000 | search_start;
0.104 | 0.104 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.249 | 0.145 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.259 | 0.011 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]