2024-11-23 14:41:28, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_005504456 2148 bp RNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X4, misc_RNA. ACCESSION XR_005504456 VERSION XR_005504456.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086023) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XR_005504456.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2148 /organism="Rattus norvegicus" /mol_type="transcribed RNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2148 /gene="Ago3" /gene_synonym="Eif2c3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 2 Proteins" /db_xref="GeneID:313593" /db_xref="RGD:1309163" misc_RNA 1..2148 /gene="Ago3" /gene_synonym="Eif2c3" /product="argonaute RISC catalytic component 3, transcript variant X4" /db_xref="GeneID:313593" /db_xref="RGD:1309163" ORIGIN
tccgggggcgacccgggagagcgaaaagcggcggcggcggggcggctggagggtcccggaggtgcgcgcgtcagcagctgtaggcgacgcaagttccggacccggcttcagcgtcctcacctcaggactgtcgccgctcttaccttgctgctgactgtctccggacagtgcctcttctgcctggagctttcagagggcgtccgctcctcacctctgtggtggcacctttctcttgtgaagcactccccacagctccatgaatggaaatcggctccgcaggacccattggggcccagcccctactcatagtgcccagaagacctgggtatggcactatgggcaaacccattaaactgttggctaactgttttcaagttgaaatcccaaagatcgatgtctacctctatgaggtcgacatcaaacccgacaagtgtcctcgaagagtgaacagagaagtagttgactcaatggttcagcattttaaagtgactatatttggagaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttacctggggaaggtggaaaagatcgccctttcaaggtgtcagtgaagtttgtgtccagagtcagttggcacctactacatgaagttctgactggtcggactttgcctgagccactggaattagacaagccaatcagcactaacccggtccatgccgttgatgtggtgctccgacatctgccctctatgaaatatacgcctgtggggcgctcctttttctcagctccagaaggatacgaccaccctcttggagggggcagggaagtatggtttggattccatcaatctgttcggcctgccatgtggaaaatgatgctcaatattgatgtttctgccactgccttttacaaagcacagcctgtcattcagttcatgtgtgaagttcttgacattcacaacatcgatgagcaacccagacccctgaccgattctcatcgggtaaaattcactaaggagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtctgtaatgtaacaagaaggcctgccagccaccaaacatttcctttacagctagaaaatggccaaactgtggagagaactgtagctcagtatttccgagaaaagtacacacttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaagcatacatacctgccactagaagtctgtaatattgtggctggacagaggtgtatcaagaaactaacagacaatcagacttctactatgattaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcagtttaaagtgcgggatgagatggcccatgtgaccggtcgagtactgccagcacctatgctccagtatggaggacggaaccggacagtagcaacaccaagccacggagtatgggacatgagaggaaaacagttccacacaggagttgaaatcaaaatgtgggctatcgcttgctttgccacacagaggcagtgcagagaagaaatactgaaaggattcacagaccagcttcggaagatctccaaggatgcagggatgcccatccagggtcagccatgtttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaatacctactcaggactgcagctcattatcgtcatcctgcctgggaagacgccggtatatgcggaggtgaagcgtgtaggagacacacttttgggtatggccacacagtgtgtgcaagtcaagaatgtaataaaaacatctcctcaaactctttcaaacttgtgcctaaagatcaatgttaaacttggaggaatcaataatattcttgtacctcatcaaagcaaccagtgatcttcctgggcgcagatgtcacacacccgcctgctggtgacgggaagaagccttccattgctgctgttgtaggcagtatggatgcccatccaagcagatactgtgccacagtgagagttcagagacc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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