2024-11-22 23:52:36, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_005500770 36848 bp RNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus uncharacterized LOC120100757 (LOC120100757), ncRNA. ACCESSION XR_005500770 VERSION XR_005500770.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086020) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XR_005500770.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..36848 /organism="Rattus norvegicus" /mol_type="transcribed RNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="2" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..36848 /gene="LOC120100757" /note="uncharacterized LOC120100757; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 113 long SRA reads" /db_xref="GeneID:120100757" /db_xref="RGD:41316876" ncRNA 1..36848 /ncRNA_class="lncRNA" /gene="LOC120100757" /product="uncharacterized LOC120100757" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:120100757" /db_xref="RGD:41316876" ORIGIN
cctgggggggagacagcaatataccagctggttaatagtaaatggatggactagagagaaagtccttcaaacccaggtccacccatttcctgcaggagtcagggacgagttggctttggagccgtggactactcctgtggctagcaaggccctgcaggccaccagacctgggagcagacagtagcatgaacctgtaagacatggacattgatggtccttgtagggtttgccttagaagacacagctgttacatggcttctccgccccgacctggagtggacaggctttccctgctagatctgtttttgctccgtctgacttgggagccacccagaacaaatctagagtctcaaagttgggtttgtgagcaggcctgggtactcttggggaagaaaagctcagggcagggtgggaccaggagattgagtgaaatgcaacctgtgggggcttagagaaagagctgggctatgttccaaggaggggtcagttggtttcttatgcccagcaatgggtttggatctggccaagggcagacagtaccatgtaacaaaggagtgagaatattaaatgaaggtatttagtaagcttgcctacagcaaacctgccacggtctggccctaggtctcaatggctgtgacagttctgttacccatgctgtccccaataatgctggtttcctcaggcagtggaacctggaccttgataggagaggactcctcaaaggtacatggtgtgatagaaaacatgagcataggcccagggccagcaaacaaaagtagccagacaggacaccgatgcgtatgcccggctgcgtaatactaaatcttcactcacaaacaatcaacttctttttacttaggtctctggtgtcacaccctgtactgatgttgggaaaacgttcacaggccaggccacttaaggcccagagccatagcctttgagtgattctgcagcatggaggcaggtgctctgctgtgggggtcacgagttcctacccactgaagcacactcctcgaaggaataggtcactgagggaggccacccaccccagaccagatgggtgacatttgtgcttaccgaaggcaaaggcaagaagagattgcatggtagttcacgtgtcccctcttacgggaacaagtcaggggcaggcgtccccaaccccatcccctctgcccactgcccatgcgcagaggccacatacttacccgggcaataacaccagagatgtacactgttggtttaggagggctggaaaacagggaggggaaacgaggatttaatgaacgattcacacaaggggaaaaggagcaaagtgaccacagaggagaccagaatgaacagtggtgtcacaaggaactgacctcatcccctctgttactttgtcaacaaccaggcttcgagggaagtgcagggcttggggacacttctgaggttagtccaggaagaatgagggtgggaatagactgcagcaaacagcagctggattacccaaaacgctttgctgctgagagtgagattgtgagtttctgagactggaaacaggggcttccctgaagcagggcagaagcaggcttctggaaatttctgactggagagactcagatgcaatgcaaactcctggccctgctgtcccctgttctccaagtatcataaaggcaaagtccttaagaagccactgctacttaaaactaaaaaagaaaaattatgtgtctgggcatgttcctatatgatctgggtaccctcagagaccagaacagggtgtcagaccctgaaactggaggtgcgatgtgagccacaacattggtgctgggcattgaacctaagtcctctggaaaagaagccagtgttcttaactattgagccaactcttctgcctcacaactttaaaactaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtctctttctctctgtgcttttgtgtgtgtaggtcaaagtcaacctcaggagcagtgcactcgtgtttctgagacagggctcttctctggcctggaacctggtgatgagtctggtcaaggtggccagtgagccccagggatccacctatccgcagcgccccagcattatgtggtttttaaactttgttgttagcacatattaagtataggctttcgttgtgtaatcgtcagttcttagcatcttatatatagctccttgtcaacagtaccgagggaagaatatagcatcaaagtaacacatgctcacggagggaagagacgagcccagacccgctcagctgctgtaatcccatctcaccactgcagtggatctctctcccgtcttcctatggggctgttcacactcttttcttattagtttttttcttacagaagtagtcatactgtttttgaatttgctatctgagctgggaatttgctgggcatatccatatctgaggtcctgttatgtgcacggatttgttttggagagatgcatggtgtagtttagaaacaccggggtgagttggaggtagaatttgaggaacggtgaacgaatgttccctgaaagagccacgcctgtgttggagattctgagtcaaaatgatttggggctctccagtcattttaaaagccattcatttatccccctgcacctgttttaacatccttttggctactagatagaaccttttgaacgggttaactaagcaagaccattaacctctaccaactctgaggccaagaatgtaacaatgtctgaaacctacagcacaggtgttttgctatgaccccctaccttatataactgatagatccattgtctcaagtgtgcgcatggtgtgtgtagaggtcagaggatagccatgggtgtcaccgctaaagcactgaccactctttgtctgtctgtctgtctgtctgtgacaaggcctcttgctggcttagaatttgtcaagcaggctcagctggctggccagcgagtccatggaacctgcttgtgtcccctccccagcactgggattacaagcgtactctaccacatcttgcttctgcactgggttttggaactcaaaccttcatgcttgtaaggcaagggctttacaactggcctctttccccactgcagtgcattgacttatgctgcttctgtggtagaacaattcactggaagcggtctgaacttgtgctgctggatcttattcacttctgtttgtctggggacaaactatttcctattccatttgaagcaggaactgtgatttgttctgatagcattcgggagacactcagaggcagactggggacgggaggtaaagacaaggctgcagccccaaaagccaggggcagaacatggggctgaagaggctcttaggatgtggtcatgcttaaggccaggtctggagggcagaggttgaggaagtaccccatgagcacccagcctgtctcctacagctctgctacttgtctgtgttgaaggaagccacggttaggttttgtgtgggtgcaggtgaaggactcggtatttagaaagtgtaccgctgctacgtcctgaagactttagtaaaaagcacgtgaaattccttaagtgatttctgtcactccatgagctgaagaagcctcatcttaccaagcaactcagaaacatcctcggatcacttggcttgtgtttgtggtggggccaactgggttggggtttctctagtacacattcatttaactacagaggagtcagtctgctgagtccaaaccccctcgtgtagtgaaggggctactgatgtgctgtctcagaacatgctggttacttctggcacgagctgcaggaaggcactaagcccatctctcctacatgcagccagcactgaggagtccataggggaggagctgatgtcctgaaaccaaggtgtgaaagaagtcagagagaggaaataggactgtcatgagcctaagccctttctgcatcccaaactgtgcctctgcctgtgtgaatctggctcctttgtccagcccaagagcacacaggataagtgagggcagacagagtggactgtactcagatgctctggggttctcagggtccatctgcttcaactgttgaccctgtcaatgggggctgctgggtgtgtctgggtgatttgaggctaagaggtctgtggactatggacccaagagcctgagggccatagactggactccaacatttttcaatcacttggaaaagaatataaaatggtcaccattctggatgcccttctaaatccccaggagcaagctgcagtaggagcggtgtggtaattaattccacatcattgttccctaaggcacggctgtgaactcaagggtccaactgcgcaatccttcttgcttttgatttactttctaatgtaagtcaaggcacctgaaggccagagcagagcaaactcctcaggagaactgcacaaaaaagtcagcctggtagggagtcaggaaagaatttgaatatgtggcagaggtcatctctccacacccactaccagagtgctaggagcaggaagcctgaaactcccagcccatcacacacagacacacacagacacacagacacacagacacacacagacacacacacacacacactacccaaacacacagacacacactacacaaacacacacacagatacacacagacacacacagacacacacagacacacacacacacacagacacacacacacacatactacccaaacacacagacacacactacacaaacacacacacacacagatacacacagacacacacagacacacacatacacatacacacactacccaaacacacacagacacacaaacacacacactcacacaaacacacactacacaaacacacactcacatacatgcaaacatacacacaaacacacagacacacaaacactcaaacacactatacaaacacacacagacacacactacacaaacacacacacaaacactcacataaacaaacacacacacacacacacagttaaaa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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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