2024-05-06 10:08:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_001840731 13206 bp RNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus uncharacterized LOC102552958 (LOC102552958), transcript variant X2, ncRNA. ACCESSION XR_001840731 VERSION XR_001840731.2 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051347.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XR_001840731.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..13206 /organism="Rattus norvegicus" /mol_type="transcribed RNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="12" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..13206 /gene="LOC102552958" /note="uncharacterized LOC102552958; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:102552958" /db_xref="RGD:7719161" ncRNA 1..13206 /ncRNA_class="lncRNA" /gene="LOC102552958" /product="uncharacterized LOC102552958, transcript variant X2" /db_xref="GeneID:102552958" /db_xref="RGD:7719161" ORIGIN
gagggagggatgacacggccagtctaaaccagtgtgtggcaagcagctagggttgcccttaaacccttttgtcagaattaactgcctttatccctcctagaggagatgcccccatgacctgtacacttctccagccccaccctcaccacactaaagaccaagggctcaccccatgggtaactggaacaccccatgccctctccacaccacagctgcgaagaatgggcttctggaactcctggaggagcccggccccttctccctagctcactccagaactctgccactgtctgctcgtgtgcgtgtgtgtgtgcgcgcgcgcgtgcgtgtgtgcgtgcatgtgtgcatgtgtatggaggccagaggttgactttgggtgtcttcctcagtggctctccacctttctttttgacacattattgctcagtgaaccgaagacatgaatggcttaggaaggcagcccagagggccccatgatccacttgtctccatgccaacctcagcacttgggttccgggtgtgtgccctacctccgacttttttttgcgggcgctgggggtaaaactcaggcccccacattgcacagcaagcattttacccacgtgtgacatcttcaccccctaagctgttggtggtttgttaccacagccacggggttcacaggacgtccccaatggaggtggcttgggctgggcgttccggtgttccattcatgaggtgggtggtcttgtcttccggggactgttggaacagatacatgactgtcattaaaccctcactaggtacggaggccccacctccttcattgcttggcttccaatagatacattattcctgtgtctcatgggagccaaggcccagtttgcctccctgcctttcctgggggctagctcccccatgcccaagggactcagtcaccagtgtctggacagagcccccaattctgtcatcaccccagatagacaaggcagctccccctggtgctctagaagcctattcttggccgctgtgacttggaggtgagtaggagtgcctgccagttgctcatgtggtgacttggtccctagtgttgaaaagaggtagaaccagagaggggtgtacgtccttggaggttgattcctaccctcagtttctccactggggctccagatgcaatcttagtacccttctggggtgctgctataggaccataggcaggggcactgacaaatgtcagtgggcaaacctttccttggtgcagtgagcttccatttcggcgatgcacaccgtaggataaactcaggggcacaccacatgtggccagcagccctgggctgcccctggttccctgctgcagatccacctgctgctcccttccactgacagtccagaggatctaaagggtttcaaacctgcccggacgcaggaacaggataacgctggtccccacatcagactagcataggatctgtgcacaggatctaataatcagtgttagctgtcggggatgagggtgctgcctgccttgtgagtgcttgctgcttttccgggatctatgatagtttctgggacacagcggatggtcagcacacgtttcttggtgatttggggtatgattcatgcttaggaacatggcaaaatctctttgtgtgtatgcaagattgcaagattatccaaatcgccccattcccccctaaatacacattatacgattgaagaaagagttaaaacaaagaggttggtgagatctggagctgctgacttcaggtgattttatttctggctcctcagttattggtctttcctaacacttattcaataaatagattgtgtttgaaataaataagaaaacgatgcagggtttatttgggagcccgtgacattgttatgtggggcagtgatcgtaagaccctgcaagtgcttatggtgcccgctcttctacacccagctctcagcagcctcaccaccacacatggcttgggttctgagggggccgcacacagccccccaaatctggctatggatgacattctgacagccacagccaagctgtaggaccaaggtgtcaacctggaatggtagcccacgagcaagtgaaacaggctcagctctttcagtgacagcctctccccctccatcccatgctgatggactacctccctgaccacagtctgccaaataccctccaacggcagaagtgggaacaaaggcccctgaagtctttgagggtcctccatggctcgtaggacacaaatgactgtacctgagaaaggttccgctgtatatggtattcactgcgtatatgcttagaagacatcctgggggtggtcttaaaccagatacacagagttagctgcttcttaaggcaattacagttataagacaagaagagggcatggagttgctgtgtgtgctggagacagaggacgctggatgtgccctggtcctatacagtgtaaaggtatttccgtcattcataggtaaagcctactaagatatggggaatctcaacagggctgccttcttccctctttctgtttcttccaccttggcacttgatgttcagagaaagctctcagactggtgtctgaacatgccgccatacccaggcccatttgaaggacacactgaagacaaggcccctggaagcctcctgcctcaccttgtccacatcttaaccatgtttctgggttgtatcaagaagccaggcatctgtggccaggacacctacatatgtgtgtctctggacttttagcagattctggaattcaaggaacttattcagctcctgacttaaatccatgtttgggacagtgcccccctctgctcagtgttttctagaaaccacttatttctgggaggtgggtgaccacttcccacacaggccccagatacctagatcctttcccttgtattgatgatcaattgatgattgattgataattgtctgctggcctcagactccaagttgtcctacttcggtgccaccgtgcctggctaccaatgtgttttctgtgtgctgtaggagcaatgcatgctgtgtccctggtggcttcttcatgccctattactacctgataccgtagaaaaccttgggtgacagtcaaaggcaacggactctgtaacattcacccaggccccaggtgaggctaggaggccatgccaatgtctgtagccccaggaaaccccttagcagaggggagtctcctgtcccctggaggaagaaaccatctctatcaatactggggaatgaactggggatgtcacccactgagctggtgctccccgggtgaggtatctccgcagcagtctccttttgctccatggcaacactgcactgagtgatccgaggacctcatagaagagtcaggatggaggcaggtggtgcttctcccttctgggacaagaaaaggtgcaaggtgggtggctttccttctgaatttcagtacctgtacctctcgattagtcatttcttgtgtgctaggcccagaacgccccatcaccagcgcctgacatattagagctgaaatgaatcttgttctcacgacagaggacatgctatatgttcccaagactctggttggggtgggaagacagggatacaggagctcagagaggcagagaccttgtagggaagtttgtcactgcacataaacactggtcattggtacagtgtcagctcacatggtccatgtcctcagaatcccctcaccagcccctgaagcaggaggcagatctaccctcccacaggctgccagaaggaaggagtgaatggctagacttacccatacactgtcagaggtctagatacatcctagagttctggagtaaggaggcatcagaggcagccccttcctccttctccaatctgcaggagagcccaactgactccctaaagaggagctccaatcagcctgtgcttctgactccattagcagatgaggttacggaatgaccagcttaaatgctcttggtcactcagtggccctggtgcagaacagggctctatgttttgtctccaagggtgccacagcctccagtcttgcacagcagtggctgtggtatgtctttgttacgttgtgcagcgtcagatgcataataactactcagtctcctagctccctatgcatgatgggtagggaaatgaatgcaaatgtcatgatacaatacaaagacacatccttagctcttgcttggctgtcttggagttggagggtgcagggcttctcaaagaatctctagggagtctgggaacctcagaaccaaagatcatttctataaattcaaagaaatggtgggtagttgacaagagcctacataggtacctgagtgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgtgcgtgtgtgtgtgtgcatttatgtgtgtgtgtatatgtgtatgtgtgtgcatgtgtgtgtatgtgcatatatatgtgtgtgtatgtgtatatgtgtgtatgtgtatgtgtgtgcatatgtgtatgtagtgtgcatgtgtgtgtatatatgtgcatgtgtatgtgtatgtgtgcatgtgtctgtatcatatatttaaactgatagcataccatgtccttttcttattccccgatgaccagccccattagaacaaagaccttccctttgtcccttaccccagctcactgtgcaggtgtgatgggttcattctctgacctcccacagccagaaggacaggcagcctgtggcccaacagctgggagttgggagatccagagaagcagacagtgccagcccaaacctctggcccaaggtgggagaccaggaggggttggatgcctatttatctttgcttctttcatggactggaaggttctggcacgagctgggatgaggccatttacacataaggagatagatgccactgtgcctcagggagagaggggcctgggaactcaccagcctctgtagtggatgccctaccaaggatacctcataggatcccgggacagccagacaattaagacggttgatttcataactcaacggctagctattt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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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