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Previous release (v1)
2024-11-23 00:21:55, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_039084914 2868 bp mRNA linear ROD 22-FEB-2024
DEFINITION PREDICTED: Rattus norvegicus Zinc finger protein 431 like 1
(Znf431l1), transcript variant X3, mRNA.
ACCESSION XM_039084914
VERSION XM_039084914.2
DBLINK BioProject: PRJNA1074393
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_086027) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Feb 22, 2024 this sequence version replaced XM_039084914.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_036323735.1-RS_2024_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/09/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2868
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/bio_material="RGD 61498"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney, spleen, liver"
/geo_loc_name="USA: Wisconsin, Milwaukee"
/lat_lon="43.05 N 88.04 W"
/collected_by="Rebecca Schilling, Melinda Dwinell"
gene 1..2868
/gene="Znf431l1"
/note="Zinc finger protein 431 like 1; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 68 long SRA reads, 3 Proteins"
/db_xref="GeneID:100911813"
/db_xref="RGD:6490489"
CDS 372..2507
/gene="Znf431l1"
/codon_start=1
/product="zinc finger protein 431 isoform X3"
/protein_id="XP_038940842.1"
/db_xref="GeneID:100911813"
/db_xref="RGD:6490489"
/translation="
MLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGENLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature <492..980
/gene="Znf431l1"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 507..566
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 588..650
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 672..734
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 759..818
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 840..902
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(855..857,861..863,867..869,873..878,885..890,
897..899,939..941,945..947,957..962,969..974,981..983,
1023..1025,1029..1031,1035..1037,1041..1046,1053..1058,
1065..1067)
/gene="Znf431l1"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 924..986
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 996..2240
/gene="Znf431l1"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1008..1070
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1092..1154
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1176..1238
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1191..1193,1197..1199,1203..1205,1209..1214,
1221..1226,1233..1235,1275..1277,1281..1283,1293..1298,
1305..1310,1317..1319,1359..1361,1365..1367,1371..1373,
1377..1382,1389..1394,1401..1403)
/gene="Znf431l1"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1260..1322
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1344..1406
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1428..1490
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1512..1574
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1596..1658
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1680..1742
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1764..1826
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1779..1781,1785..1787,1791..1793,1797..1802,
1809..1814,1821..1823,1863..1865,1869..1871,1881..1886,
1893..1898,1905..1907,1947..1949,1953..1955,1959..1961,
1965..1970,1977..1982,1989..1991)
/gene="Znf431l1"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1848..1910
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1932..1994
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2016..2078
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2100..2162
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2184..2246
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2220..2297
/gene="Znf431l1"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 2268..2330
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2283..2285,2289..2291,2295..2297,2301..2306,
2313..2318,2325..2327,2367..2369,2373..2375,2385..2390,
2397..2402,2409..2411,2451..2453,2457..2459,2463..2465,
2469..2474,2481..2486,2493..2495)
/gene="Znf431l1"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2340..>2504
/gene="Znf431l1"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2352..2414
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2388..2465
/gene="Znf431l1"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 2436..2498
/gene="Znf431l1"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
polyA_site 2868
/gene="Znf431l1"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
gaaggcgggcttttccgggtgcctaggtgtaggattcggttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggtggcatgtattcatgacattaatactgcctggctatattgcctgagctttctgagtcattggactgcaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagcgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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