2024-11-22 23:45:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_039084909 8505 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like (LOC120094815), transcript variant X9, mRNA. ACCESSION XM_039084909 VERSION XM_039084909.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086027) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039084909.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8505 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="9" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..8505 /gene="LOC120094815" /note="zinc finger protein 431-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 95 long SRA reads, 3 Proteins" /db_xref="GeneID:120094815" /db_xref="RGD:41247165" CDS 5841..8144 /gene="LOC120094815" /codon_start=1 /product="zinc finger protein 431-like isoform X5" /protein_id="XP_038940837.1" /db_xref="GeneID:120094815" /db_xref="RGD:41247165" /translation="
MLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPHDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGQNLYECDQCGKAFASHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 5934..7178 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 5976..6035 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6057..6119 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6141..6203 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6228..6287 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6309..6371 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(6324..6326,6330..6332,6336..6338,6342..6347, 6354..6359,6366..6368,6408..6410,6414..6416,6426..6431, 6438..6443,6450..6452,6492..6494,6498..6500,6504..6506, 6510..6515,6522..6527,6534..6536) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 6393..6455 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6477..6539 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6561..6623 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6633..7877 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 6645..6707 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(6660..6662,6666..6668,6672..6674,6678..6683, 6690..6695,6702..6704,6744..6746,6750..6752,6762..6767, 6774..6779,6786..6788,6828..6830,6834..6836,6840..6842, 6846..6851,6858..6863,6870..6872) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 6729..6791 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6813..6875 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6897..6959 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 6981..7043 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7065..7127 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7149..7211 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7233..7295 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7317..7379 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7401..7463 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(7416..7418,7422..7424,7428..7430,7434..7439, 7446..7451,7458..7460,7500..7502,7506..7508,7518..7523, 7530..7535,7542..7544,7584..7586,7590..7592,7596..7598, 7602..7607,7614..7619,7626..7628) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 7485..7547 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7569..7631 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7653..7715 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7737..7799 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7821..7883 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 7857..7934 /gene="LOC120094815" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 7905..7967 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(7920..7922,7926..7928,7932..7934,7938..7943, 7950..7955,7962..7964,8004..8006,8010..8012,8022..8027, 8034..8039,8046..8048,8088..8090,8094..8096,8100..8102, 8106..8111,8118..8123,8130..8132) /gene="LOC120094815" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 7977..>8141 /gene="LOC120094815" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 7989..8051 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 8025..8102 /gene="LOC120094815" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 8073..8135 /gene="LOC120094815" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 8505 /gene="LOC120094815" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gggagctggtgtggtggttctttcccggggctgagttggaatccgcggttacctgtgaggtcttagccactcactagacccagcggcagtttctgaataacttccttgtaggggctgcaactgtgcagagcatttggcttgtgtacggaaagatccttggcgctatcccaaactcagaagcctagtttctacagttctgttcttagcatttaacattaaggtgtaagatccatttggagttattttgtgggggttgtggaaggcatctcatgtgctgggtagcaatccaatatcaagctgtaaaataagagtagaattgatgaggtaaaggatttcctaaaggttaggagatagcaaggcacactaagtagaatttagctgagagaggactgcctgcaaaataccacacgtgtaagtagtaagctaaccaggcctgttagagattaggatgctatgatacacaagtttgttcaccaggattgtccagaaatatggcatcagatcccgattagcaaccagccactaggcccatctccatatcaaagagcaggcctctaagaagctgatcagtggggcattacaggatcacaatcaacagtaaggcctggtgtgccacaaaggtttagttttcttcttgagaaaagcattgttcgccacatgggcaagatgactcctgggactgtaagaccctcgctctagtctcaggatggcgcaccccagataacacgagagaccagtcttgatgtaaaagcaagaggtcgtttaataataacgaagctccgggcgaagacgtgtctctcagaagagacagaggagttgaccacgaaactcaaaagtcagagggttatatagagaaagctagggggttttggtgtggttacatacaattggctcattcaaacatagcagtgagaacaaagcagagagagtaagtgctagaagtcaggggcttaacaggggcctgaggacacctagttgagatatggccctgagtgtgctagggggagaagtcttcctgccagacatcccacaagtcagtcccattaatgcaggctggttcctgcattccttttccttatctttatggcttgctagtcctgcctggacagtgtttcctgtgcttctttatctttatggcctgctagtcctggctacagggcttagccctgggtctgtggccttttggggtttattcttttaattttgcatctccaaacctagaattcgtataattctcctttcagtgacaaccattagaaaaggtaaaacaacaacaaacactgttgtattgtgtgctggcctgatcaagctacactttccctctttttcctgaggtccccgtgtttgagctccttctgaaactcagggacatgcttggcagagccagtaaccatctagggcctagtccttgggagctttccctggagccctgggtatagagatcaaacacctccactaaaaccaggaatatgcttggggccagcgcatttgggaggggttgcttaagattctgagaatacaagtcttgccacaatatgggctctgggtccctaggccactatgggcttggtaaggaatatttttgaaatacactgagttccttgtgcatcactgtttgattagacttttcctgagtgtgtcccattatatgatgtttctgctaacttcgtagtttaacctgtctgctgacttcatagatgtctcccgtttttttccatttccctcatgtaaactgtaaacaaggtgacattcttcttaagcttacttagtttaagaccctcgcaccccaccccccagcttttatactttctaccttctccttttcctatgtttttcttcctctgagaccttccacttaggacactgtcactaatctactgttttagggcactggtgtacttaaacatcctggaaatgtttgctgtgtaaatgtcctatctaagtggccagacttgtagcctccagtttatatttgaattgttcaaaacttaacctggaacctgaacctaagataaacctaagggtgacagcatacatggaatgtaaaatctacctaggctagattctcttttagcattttaaacccagctaactggatctctgctggtctttgctactttgtggtttctttttccccacttttaacccccctcctcagctcccctccccccaccctcatttcacccactaacaccagataggagagaaacaaggatggaggagaaaaagatccttgaatctagttccttgtacttgacccacaagcttgagtcgaacagtctccgctggggggagtgaagatgcaaagccaagagttagatttggggggactgctggttaatacagctgtctcgagtttgtttttcctaatttttatgccccacagtgccattgaaagcaaagccacaagttaacaaacaattctccaaaatatgcacagaatatcagttcttatccagaggcacctccctgttccttccaccaaggtcttttctgaggtatcttgaaatctcaaaggaaactcctttgagtgacttggtgtaatggaggcagctgttggctgtgaggtgctgagaagaaggcagaatcagagaatcgtgagtgttctgcacagcactcactcccaggcagtacttagtttactttcctttataaaactttacagaatgaaattgtatgcctatctggttgattaaccacatgtactttcacaagaagtcagcattagatgcttcctttgtcctcaaatgtctttttgttttaaggtatgtcactgaggctagggtacatattacgtgaacaccccaccccacctcaccccggggctgcagtggtggcagcctgccacatgcaaggattttttttttcttcactaaatgtttgtgtcaattttggctgtcgagagatgtttaaattcatgctggcataagaatatatgctcaatgcttctttagatatttagactgttttgtgtaacaaatatcagtttattacccctaggatggcgagcctcctcgagacagaataagtagtaaacaacacaacacttagcattcaatattgagcgacaaagattccagctctgagtcccacaccaatggagtgctagacagcatcttagaaccttcaactgtaaaactgactaaatagcacataccattggggattactgtaaaactaggggtgaaatgtgtaagactgtgcaggccctgtcacctaatgagcaccaaataaacattagttactatttctgtcactggtgtttgtgttattagagagcctatgcaggataggggacaacagtaagtgtgcactggtaaacacaatcccccccctccacacacacatcattaggaatgatgagagattgagactaagacaactctagcagttaacattttggattgtttcaatgacacccttttcacttggtcttactacctctgaacattgctaatatccaacccacctttttatctgtttttaaaaacaaaaatacataaaatggactattaaggcaagctgacaacagctttttcttttttttaatatttatttttagtatgtgtgggagtgtgagggcaccctcagagactagaagcgtctggtcccctggagctggaggtagaagcagctgtggactttccaatgtggatgcctggaaccaggccttggtcttcttcaatggtagtctgtgctcttaaccactgagccttctccccagcccccaaaactgcttctcttgaagaagggaacacatgttttaaaattgtatcacattacctagtaaggactatcacaaacaacagatgctgttaaaaaaaaaaatacaggttgtgatttagccattaaaacgtagaagacaggcacagtgtccctctagctgacctcagcctctgtcagatttgtatctcatgtagtaatagagcctcaggtgggaggttctcaaagattggacacgatatttattacccaccaagtttgcagagcaaatacatgttatctcaaactattgtatagttttctagcctgcaactttccctaaatgatttttactatttgttctaaaaaacaaaaaagctcaacaacaacaagagaaaccccagcatgctgtttcctgacattttctgtatttcatttcccctagaaagagcagggcccaaagcttctgaatcatggtgggctgtacttaaggacaatagtgcattaacacacttttctcccatttaatttattttaatcattttattccagcaaagcttcagagggcagaggggaaattccattcccccctatcatattctgccctgccttgctgcacatcagctcagtggcttaccaagggcaaagttttaatgcaggtttgtttttgtttttgttttttttttctttaagatcggggtacagtgtttctaaacagaaagaactgttctaagtccattagtagacaccaaatagctttgagaataggtctttctggaaacaccttcaataatgtcagcttagggtgctaacagaggccacttgagaaatcattttaaaccaaaactaggaaatccacttaagaaagggttaataaatcagtataaggacgagacgttagaactgttgatagtcactgtacactgactttaaacatcaattaagaaagtggtaattgttcaaattctgaaggttatgataggatcaatgaaaaaacatctttcttagtgaatcataagggagaagcttatgatttgactcatttcccagtcaatggaagcctgtggtttgaacttgttttctagttggtatggtcacagccttcaatgggtcagaaccaaaagccatgtactttggaatgcttgtacgaggctcaacattgacagtagaaattataaaaatatgtatagtgaatagtcacatgaaaagttaatacgaaactggaaacggaagtagaaaaattaatattactgaatgaatacagtattacatgtccttttgataccgtgtagctaaatcaataaatatatttattaatatttttgagttaaatattgcaaaataaaataactttaaaatatttattgactcgtgtgggtgcatgtacctacttgcacacatgtgagtgccacagtgcacatgtagagacaagaggacaacgttcagaagttagttctctccttcctttatatctattctggggctaaaactcagatcatcaacccactgagacatctcactggccctaaataaattctttaaatctctatttacatcccttaaagttcctatactcaagttgacaagaaaacaaaacaaaagatactactatcttagttcactttctggccaaagcctggtcaattttttttaaaagaaaataggtttgttgggctcttgactgtggagactgggggtttaaagaacacagcaacagtgtctgattagggccttcttgctgcatcataacatgatgagggcatcactagtgagacagggcagatgtgataatgaggtttctctacttgtccttatacagccactgtgccatcatggggattctattcgtggtcgtatctaaactcaagttaatgaagacactgagcaaaagttctgcttcttagcacacagcaaaaaatgttttattgctttgaaaagaagaaatcttgcttcatcaaaccacaaataggctggcccatgacaaacagaagaagtggatcccaccttgccccctgtgtcttcctttgaaaagtactattgtgcctgatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggacagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctacaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctgtgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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