LOCUS       NM_001433385            1292 bp    mRNA    linear   ROD 15-AUG-2024
DEFINITION  Rattus norvegicus POU class 2 homeobox associating factor 2
            (Pou2af2), mRNA.
ACCESSION   NM_001433385 XM_008766355
VERSION     NM_001433385.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 13, 2024 this sequence version replaced XM_008766355.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.577261.1,
                                           SRR26643288.33719.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16418988, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               JAXUCZ010000008.1  60544893-60545000   c
            109-218             JAXUCZ010000008.1  60534296-60534405   c
            219-261             JAXUCZ010000008.1  60509304-60509346   c
            262-560             JAXUCZ010000008.1  60505967-60506265   c
            561-1292            JAXUCZ010000008.1  60504142-60504873   c
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..1292
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /note="POU class 2 homeobox associating factor 2"
                     /db_xref="GeneID:500997"
                     /db_xref="RGD:1562914"
     exon            1..108
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..962
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /note="uncharacterized protein C11orf53 homolog; POU
                     domain, class 2, associating factor 2"
                     /codon_start=1
                     /product="POU class 2 homeobox associating factor 2"
                     /protein_id="NP_001420314.1"
                     /db_xref="GeneID:500997"
                     /db_xref="RGD:1562914"
                     /translation="

MDSVPGDYSKRVYQGVRVKHTVKDLLAEKRSRQTSNSRLNGSVSSSQPPFVQMPGSPVMSGYYGVRRSFLSDSDFHSGKQFSNDLYMSSVTKPFACESSAGQSHTGLLESYLAEPYGDYRPPALTPTPGSLFSTSALPPLLPPPFPSDPTHFVFRDSWEQTVPDGPSQPDPMPADALQTLPPSTSCLSQLESGSSTQHRNMGWGASLAGAQPYSLHALEDLHHTPGYPTPPPYPFTSFMTVSNDLPPKVGPLSPEEGSDVSSLHDPSPWTKEDGSMAWGSYECRRAY"

     exon            109..218
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /inference="alignment:Splign:2.1.0"
     exon            219..261
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /inference="alignment:Splign:2.1.0"
     exon            262..560
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /inference="alignment:Splign:2.1.0"
     exon            561..1292
                     /gene="Pou2af2"
                     /gene_synonym="RGD1562914"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agaagtcttcccaccaggagcaggctaagctatccaagagatcaggacccctcgctaaggacatttctcagaggcctggcactgtggcactacccaggatggacagcgtcccaggagattacagcaaacgtgtctaccagggtgtgcgagtgaagcacacagtcaaggatctcctagcagaaaagcgctccagacagacaagtaactccagactcaatggcagcgtcagctcctctcaacctccgttcgtccagatgccaggatcaccagtgatgtcaggttactacggggtcaggaggtctttcctgtctgactccgacttccatagcggcaaacagttctcaaatgacctctacatgtccagcgtgaccaagccctttgcctgtgagtcctcagctggacagagtcacacaggcctgctggagtcctacctggcagagccctacggggactaccgcccaccggcgctgacgcccacgccgggttccctgttcagcacttcggctctgccaccactcttgccacctccgttccccagcgacccaactcatttcgtctttagagactcctgggaacagacggtaccagatggtcccagccagccagaccctatgcctgccgatgccctgcagaccttgccacccagcaccagttgtctctcccaactggagtcaggaagcagcacccagcacaggaacatggggtggggggcgtcccttgctggggctcagccctactcgctgcatgccctggaagacctgcaccacacaccggggtaccccaccccacctccttaccccttcacttctttcatgacagtgtcaaatgacctcccacccaaggtggggcccctctccccagaggaagggtcagatgtctcttcccttcatgatccttcaccttggacaaaagaagatggcagtatggcctggggctcttatgaatgccggagagcttactgaggagcaggccagaggacttctgcatccttatagaagctggaccctgtgtccacagattcttctaggcgtgctagttcattccgaactggattttagtttacagcacgattctgtcagtgtcctgacatctctgctcttatccaatgtaaaaaacccctacaaaacactacaatgtcaatcaaatattttgtgggtcgcatcctaatgagacgccctctacaaggaggccactttagaactttggttacccatttcattctaaaatttctgttacctttaaagcattgtttttttggcactggttatttttcttatattgcattaaaaaaa

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