LOCUS       NM_001433272             850 bp    mRNA    linear   ROD 11-AUG-2024
DEFINITION  Rattus norvegicus reproductive homeobox 9 like 1 (Rhox9l1),
            transcript variant 1, mRNA.
ACCESSION   NM_001433272 XM_006257483
VERSION     NM_001433272.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Borgmann,J., Tuttelmann,F., Dworniczak,B., Ropke,A., Song,H.W.,
            Kliesch,S., Wilkinson,M.F., Laurentino,S. and Gromoll,J.
  TITLE     The human RHOX gene cluster: target genes and functional analysis
            of gene variants in infertile men
  JOURNAL   Hum Mol Genet 25 (22), 4898-4910 (2016)
   PUBMED   28171660
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Aug 8, 2024 this sequence version replaced XM_006257483.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1468113.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               JAXUCZ010000021.1  121425885-121425993
            110-569             JAXUCZ010000021.1  121426178-121426637
            570-615             JAXUCZ010000021.1  121427262-121427307
            616-850             JAXUCZ010000021.1  121428209-121428443
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..850
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /note="reproductive homeobox 9 like 1"
                     /db_xref="GeneID:100364002"
                     /db_xref="RGD:2321855"
     exon            1..109
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..711
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /note="isoform 1 is encoded by transcript variant 1; rhox
                     homeobox family member 2-like; homeobox protein PSX3;
                     reproductive homeobox 9-like"
                     /codon_start=1
                     /product="reproductive homeobox 9 like 1 isoform 1"
                     /protein_id="NP_001420201.1"
                     /db_xref="GeneID:100364002"
                     /db_xref="RGD:2321855"
                     /translation="

MDTPQDSCQSFQKSLSLGAEVDPEQQHGGTAVVSEAREVGDQSQRLVGGLVQGGLDQGQPAQGQLAGGNLPQEEPAELSLAQDATGVGEEGDEKEEEMEARYAGDGAYGPEDNNVQQEGDQHPNDQEQPQQEAAIPEGSRGQQAGNNLAHPRYSRTRFTPSQLRDLERLFQETRYPSLRTRKDIARWMGVEECDVQNWFRMRRSLFQRSRRVLLLCTLQPFPQNNSS"

     exon            110..569
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /inference="alignment:Splign:2.1.0"
     exon            570..615
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /inference="alignment:Splign:2.1.0"
     exon            616..850
                     /gene="Rhox9l1"
                     /gene_synonym="Psx3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcaaggtcagatccagtgattttcgccatggacactcctcaagacagctgccaaagtttccaaaagtctctgagtctgggagctgaggtggacccggagcaacagcatggtgggactgcagtggtctcagaggctagagaggtaggagaccaatcacagcgtttagtgggcgggcttgttcagggtgggcttgatcagggccaacccgcgcagggccagttggctggaggcaaccttcctcaagaagagcctgctgagctcagtctcgctcaggacgccacaggagtaggagaggagggagacgagaaggaagaagaaatggaagcaagatatgctggtgatggtgcttacggccccgaggacaacaacgtccagcaagaaggtgaccaacaccccaatgatcaagagcagcctcagcaagaggcagccattcctgagggcagcaggggtcaacaggctgggaacaacttggctcacccgcggtacagtcgcacgaggttcaccccgtctcagctgcgtgatctggagcgcctgttccaagagactcgctaccccagcttgcgaacaaggaaggacatcgcacgatggatgggagtggaggaatgtgatgtgcagaattggttccggatgagaagatctcttttccagagaagcaggagagtgctgcttctctgcactctgcaaccatttccccagaacaactcttcctgaagattttggagcagcacttgagtgccaacgcctgtcccagagccacatgaggaaggcttcttctgagccacccataatggccatgactacctttacttccctacagttatttgagcaataaagacgtggattctaagta

//