LOCUS       NM_001432017            1476 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Rattus norvegicus developing brain homeobox 2 (Dbx2), transcript
            variant 1, mRNA.
ACCESSION   NM_001432017 XM_001053826
VERSION     NM_001432017.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Takahashi,M. and Osumi,N.
  TITLE     Expression study of cadherin7 and cadherin20 in the embryonic and
            adult rat central nervous system
  JOURNAL   BMC Dev Biol 8, 87 (2008)
   PUBMED   18801203
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 24, 2024 this sequence version replaced XM_001053826.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399484.523394.1,
                                           SRR22399481.2699039.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-544               JAXUCZ010000007.1  128681252-128681795 c
            545-640             JAXUCZ010000007.1  128667370-128667465 c
            641-828             JAXUCZ010000007.1  128659256-128659443 c
            829-1476            JAXUCZ010000007.1  128651603-128652250 c
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q35"
     gene            1..1476
                     /gene="Dbx2"
                     /note="developing brain homeobox 2"
                     /db_xref="GeneID:541457"
                     /db_xref="RGD:1359605"
     exon            1..544
                     /gene="Dbx2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    19..21
                     /gene="Dbx2"
                     /note="upstream in-frame stop codon"
     CDS             22..1155
                     /gene="Dbx2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     homeobox protein DBX2"
                     /codon_start=1
                     /product="homeobox protein DBX2 isoform 1"
                     /protein_id="NP_001418946.1"
                     /db_xref="GeneID:541457"
                     /db_xref="RGD:1359605"
                     /translation="

MDGSDTPSIPVVKTQSGSADCSRTLPEALLRAKDALRSPDPAGALSRSPRTRSPRLPGQRARTMLPSAVAAQAGAYWDVVASSALLGLPAPGFGSLGKSFLIENLLRAGAGPTHAPPSPRPAAGPECPQLRSLPANPVPLKLCPAGPFGARWAFQMPPGRAPGERDSAFQPSAPVPSKPFLLSAGPFYSACCGGSCRRPASPTAFSREEHGLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRRKLAISLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCLQEVSLQEDRLAQPAAGCPPQCPSVWEVSQPHSSPSWREESPESVERLSQENSGVPEAGSLRGVLYLCPEKGPRDKDGLCSAI"

     misc_feature    <136..579
                     /gene="Dbx2"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    706..870
                     /gene="Dbx2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            545..640
                     /gene="Dbx2"
                     /inference="alignment:Splign:2.1.0"
     exon            641..828
                     /gene="Dbx2"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1476
                     /gene="Dbx2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

actgtgggctggatgacatgaatggatgggtcggacacaccttccatcccggtcgtgaaaacccagtccggatctgcagactgttccaggacgctgccagaggcgctgctgagggctaaggacgcactccgcagcccggatcctgccggcgccctgtcccggtccccgcgcactcgctccccaaggctcccagggcagcgggcgcgcaccatgctgcccagcgctgtggccgcccaggcgggagcctactgggatgtggtggcgtcctccgcactcctcggcctccctgcgcctggctttggcagtctgggcaagagtttcctgatcgagaacttgctgcgcgcaggggccgggcccacgcacgcgcccccgtccccgcgcccagctgcgggtcccgagtgtccgcagctgcggtcgctgcctgccaacccagtgccgctcaagctgtgcccggccggaccctttggtgcgcgctgggccttccagatgccccctggccgggctccgggggagcgggacagtgccttccagccctcagccccagtgccttccaaaccctttcttctgagcgccgggccattctactctgcgtgctgcggtgggtcctgcaggcgcccagcctcccccacagctttttcaagagaggagcacgggctgcctctgctgacccaggactcaaattccaaagctcgaagggggattttaagaagagctgtgttctcggaggatcagaggaaggccctggagaaaatgtttcagaagcagaaatacatcagcaaaacagaccgaaggaaactcgccatcagcttgggactgaaggagtcacaggtgaagatttggttccagaacagaaggatgaaatggcggaattccaaagaaaaggaagtgctctccaacaggtgtctccaagaagtgagccttcaggaagacaggctggcacagcctgctgcaggctgtcctccacagtgcccttcagtgtgggaagtctcccagccacactcaagtccgagctggagggaagagtctccggaatctgtggaaagactgagccaggagaattcaggggtcccagaagcaggttcactccgaggtgtcttgtacctgtgtcctgagaagggacctcgagacaaggatggactctgtagcgccatatgacaggagcgtgctccatgttcattgaaaaggacccttagccagtaacattgggattaaagccagttagaccgtgcctcaaaactgccttaaactaataccttggtgtgatgtctgagccattgcctaaggagagccaccctactgcttcttatttagccctagactaaggatcaatgtgtaaatggaatagaacctttcagaagatatgacaagactgaaagaagagccaggatcagcccagagcccgtctggttacctgtatatgtgcctgtgcctacgtgtctgtatgtatatgctcattaaatacatcagcagaaacta

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