LOCUS       NM_001408904             989 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus Rhox homeobox family member 13 (Rhox13), mRNA.
ACCESSION   NM_001408904 XM_001077350
VERSION     NM_001408904.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000455.1.
            
            On Jun 30, 2022 this sequence version replaced XM_001077350.7.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-642               JACYVU010000455.1  1868200-1868841
            643-688             JACYVU010000455.1  1871050-1871095
            689-989             JACYVU010000455.1  1874432-1874732
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..989
                     /gene="Rhox13"
                     /note="Rhox homeobox family member 13"
                     /db_xref="GeneID:691244"
                     /db_xref="RGD:1586264"
     exon            1..642
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    62..64
                     /gene="Rhox13"
                     /note="upstream in-frame stop codon"
     CDS             104..808
                     /gene="Rhox13"
                     /note="rCG53272-like; homeobox protein Rhox13"
                     /codon_start=1
                     /product="reproductive homeobox 13"
                     /protein_id="NP_001395833.1"
                     /db_xref="GeneID:691244"
                     /db_xref="RGD:1586264"
                     /translation="

MAQRVSFDHNYYFMECEEETNAGVQARAVASTSTMEASGAMAVAQAGAACRSHASRGTIGYDTVYEPNVKGDPKQESESDTEESYDDEDDDEDEGDEDDLSTSDQDTSDPEQEEAALFVAAAAPPIAPAAAAIQIPGPHRSRRRRHRRHRRSSPYLFTQWQVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQRKNERRAMLRNMPSGAEDFIFMTDVEEPC"

     misc_feature    order(569..571,689..691,698..703,710..712)
                     /gene="Rhox13"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    572..721
                     /gene="Rhox13"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            643..688
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
     exon            689..989
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccttgctttcggcttccgtctcgatcagcaaaagacgccaggcatcgaggtagttcgttcctagggccccaaagctcttggtggcttcggcccagttctagttatggcccagagggtctcttttgaccacaactattactttatggagtgtgaggaggaaacaaatgctggcgtccaggctcgggccgtggcctccacctcaaccatggaggcctcaggcgctatggcggtggcgcaggcaggggcagcgtgcaggagccatgccagtcgaggaaccataggctatgacactgtgtatgagccaaatgtcaagggtgatccgaaacaggagagtgagagcgacacggaggagagttacgatgatgaagatgatgatgaagatgaaggtgatgaagatgacttgagcaccagcgaccaggatacttcagatcctgagcaggaggaggcagctctttttgtggctgctgctgctcctccaattgctcctgctgctgctgcgattcagattccgggcccccaccgttcccgccgacgccgacaccgacgccatcggcgtagctccccatacctcttcacgcagtggcaggtcgaggaaatggaaaacctgtttgaagagaccccgtacccagatgtgcttacaaggggagagcttgcaagaactttgaatgtgcctgaagtcaaagtgaaggtgtggtttagcaatcggagagccaagcagaggaagaatgagagacgagcaatgctgagaaatatgccatctggtgctgaagacttcattttcatgacggatgtggaagagccttgttaatgtgccatccttattcagaagacaaagggcaacttagtgacctatgtgcccaatgtcaggcttaactattcagcatgcacattactaataaaagcatgaatttccatgttgcttaacttcatgtgtgttctggggctttgtacgacatgatgtaggctattcaggatgtaggctatttaag

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