LOCUS       NM_001408871            1135 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus claudin 34B (Cldn34b), mRNA.
ACCESSION   NM_001408871 XM_001056750
VERSION     NM_001408871.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000391.1.
            
            On Jun 29, 2022 this sequence version replaced XM_001056750.5.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-154               JACYVU010000391.1  122642-122795       c
            155-234             JACYVU010000391.1  118273-118352       c
            235-1135            JACYVU010000391.1  116771-117671       c
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1135
                     /gene="Cldn34b"
                     /note="claudin 34B"
                     /db_xref="GeneID:680342"
                     /db_xref="RGD:1592987"
     exon            1..154
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     exon            155..234
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    158..160
                     /gene="Cldn34b"
                     /note="upstream in-frame stop codon"
     exon            235..1135
                     /gene="Cldn34b"
                     /inference="alignment:Splign:2.1.0"
     CDS             260..886
                     /gene="Cldn34b"
                     /note="claudin-34; rCG36429-like"
                     /codon_start=1
                     /product="claudin 34B"
                     /protein_id="NP_001395800.1"
                     /db_xref="GeneID:680342"
                     /db_xref="RGD:1592987"
                     /translation="

MLMKNCHHQMGGFALTTVAWLLCCISIGLPQWQVWHYEDPVILKPTVAFVGIWRTCIFHTDSNSSNNRLCHQYSYRDSFVPLYIRINQHLLLVSSFLGLFGKITTIIALSNVSMGRVRRNATCNPFSLSGILNIIASSFLYLAVLFNYIAIVRKWRVSFPPSFHMPSHPHTQKMGSAMALAIIAAVFFLLSGTICLSSNLGKSPHSKI"

     misc_feature    311..850
                     /gene="Cldn34b"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      

taggccagtactaataggccaggtgctcataagccaacaaggagactcaaaggataagggagagtcactgtttccttgtcagctccactggcatactttactgattgccctgtcacatcacctaccaacagttaacttgaagacagcaactgtgtattgatgtgatactgtattgcacacagccaatgaaaaggaagtaataaaaaagctgaaaacttccagacttgctgctagttcacaagtattcactgtcaccattatgttgatgaaaaattgccatcaccaaatgggaggttttgctttgaccacagtggcctggctactttgttgcatatccataggcctccctcagtggcaagtgtggcactatgaagaccctgtgatcctcaagcctacagtggcttttgtgggcatatggagaacctgcattttccacactgacagcaactccagcaacaacagattatgtcaccaatacagctaccgtgattccttcgttcctttgtatattcgaataaaccagcacttgctgctggtttctagctttcttgggctctttgggaaaatcaccaccattattgctctttcgaatgtgagtatgggaagagtacggaggaatgccacctgcaatccattcagcctttcagggattctgaacatcattgctagcagctttctttaccttgctgttttgtttaattacatagccatcgtgcgcaaatggagggtttccttcccaccatctttccatatgccttcccacccacacactcagaagatgggaagtgccatggctttggcaattatagctgcagttttctttctactaagtggcacaatttgcctttcttcaaatttaggcaagtcgccccattccaaaatttaaaagtaaattactacctaacatagccttgaaatgccagcaaagatagtgactagtcttccttcatgtgtctatataaattttcaaacatcttgaaaggatgccaattgtggcctgtgacaaagaaagagtccagttgacttccccttatatttttgggcttctttgtgtcatcttaattcattatttggattgtgggattttgttaaataaaaatctcatttaatgggtagtaataaatttgtgttttac

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