LOCUS       NM_001109317            4130 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus transmembrane protein 47 (Tmem47), mRNA.
ACCESSION   NM_001109317 XM_001060274 XM_576973
VERSION     NM_001109317.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Bruggeman LA, Martinka S and Simske JS.
  TITLE     Expression of TM4SF10, a Claudin/EMP/PMP22 family cell junction
            protein, during mouse kidney development and podocyte
            differentiation
  JOURNAL   Dev Dyn 236 (2), 596-605 (2007)
   PUBMED   17195181
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473966.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_576973.2, XM_001060274.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..4130
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /note="transmembrane protein 47"
                     /db_xref="GeneID:501569"
                     /db_xref="RGD:1564799"
     exon            1..456
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    69..71
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /note="upstream in-frame stop codon"
     CDS             231..776
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /codon_start=1
                     /product="transmembrane protein 47"
                     /protein_id="NP_001102787.1"
                     /db_xref="GeneID:501569"
                     /db_xref="RGD:1564799"
                     /translation="

MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPANLDSWHCESTLGSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY"

     misc_feature    291..740
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            457..597
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /inference="alignment:Splign:2.1.0"
     exon            598..4130
                     /gene="Tmem47"
                     /gene_synonym="RGD1564799"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgaagattctctgtgcttttgctgtcgctgcagcagcggacgacctccttagggctagacgtcccagctaggcgagtccgttgggcgctcggtgtgctaaacagagccccgaggtaggagttctcggtgcgtgtgccgccgcttttctgttcgggaagtccggttctgggctcttcggaccctcctggcgtcctcgcctgagtcgtggagggcggcagcggcgcccgggcatggcttcggctggcagcggcatggaagaggtgcgcgtgtcggtgctgaccccgctcaagctggtcgggctggtgtgcatcttcttggcgctgtgtctggatctgggagctgttctgagcccggcctgggtcaccgcggaccaccagtactacctgtccctgtgggagtcctgcaggaagcccgccaacctggatagctggcattgcgagtccacgctcggcagcgattggcagatcgctactctggctttactcctgggcggcgctgccatcatactcattgcattcctggtgggtttgatttcaatctgtgtgggatctcgaaggcgcttctaccgacctgttgctgtcatgctttttgcagcagttgttttgcaggtctgcagcctggtcctttatccaatcaagtttattgaaactgtgagcttgaaaatttaccacgagttcaattggggttatggcctggcctggggggcaactatattttcatttgggggtgccattctttattgcctgaaccctaagaattatgaagactactactgaagtctgaaaacacacacacacacacacacacacacacacacacacacacacgcacatgcacacatgtgcacgtgcacgcgcacacacacacacacagcacacacacacacacacacacacagcacacacacacacagcacacacgcagcacacaaaaaagagaaaacatccatccaacaaaagatttatgttgacatcatttctaattctattttctaaaacacttgtggagcctcaagcagtttgctcagttgatttaatagcctttgccttttgtctgccaacatcataaccagcttttatatccattttagggacctgcacaaattaagagcactgattagatataggcatatgcttcaaacttccaatatgctcatgctatttttcttgacatgtgaagggtctgtatgacagcaaccattgttggaatgagaattgccagtctcttattgccttcaggggaacagctggcctaagtgacatgtaaaattcctttgctcttacaacatttctactggtggagcccttatcacctgtttataccacacagtgactatcttggttattggtgacttgcttcagtgagtttttggaaagcaaaactgtcctttggacatctaatgagaatcatagatatagccatttaattctaccttaaggttattctttttaatagcaagttattgtttgccaattgtcatctcctgggaagaaaatcaaggtttggagacatgtgtttttcattatgcagttacagggtgtctgctttcccctggggcaatcagaaagacatgcccatgagttgcttttgtaccctttaaagccctttacacagttttgcagcaaacaattgtccatatgtaacaagctttttcttcacaccattggccattctatactggtaataagttgttcattaatagtctacatacatgtatctatcattcatataatcaatacttgctctagtgaagcaatttgaacactaaccttgtatgcattaacagacttagattggtattcacagttatttaccatacaaaaattcatataccttaaagcttttgctctgtgttctctactgattcattggaaagtgttaatagaattgcctaagaaaaaaattgaaatgctgttaatctgaaattaatgattcttttataagcattgtagttcaaaagagagtagaattaggatgatcattttgtgtaacattcattaaaatataaggctgctatttttgcaagtattttaaatgtcttcattttaaaataaaggaatagtgatagatttatattaatgtctaaatgtctcagtagacaagtagtgttccgctttcacctggtcctctgaattgaagtgatgggctaactgattcgtgcacacaagtatgatgaatttatgatagggaaatcattcactgactgttccaagggaagaaagtatcaacaataaggtataagtttgcaatgaatctctactgcaaacttgtgttaattctctttattatacaaatctggatagtttaactataaacctatttttatataaaatatacaattctgaaaggaaacttataaatgattatttttgttaactaagacattaaagcaagtttactcttgtttgaccctcttgaagacagaaacattggggaagaaatctttaaaatatatctatttactaatatattatacaatccattaagagaaggactgtgtcaatagtatttaataatttgctttacctcccacagcagacttctgctttcagcttatcttaagaatggttgccaaaaacaactgcctttccctgaccctaaaatattgtattcaaatgtcaaaatcaattgtgatttttttatggaatcgaagtaaatatgaatacctaattcattcttattttagtagtgatagacaaacattattaaatgcatattagagatcaacctttatgaaaatgtgtgattctatcaagaatcataaggaactgaatagaaaaattacagaaagttattaatattatataatattttgaagcagctttcttaaaatcataaacactggggcagaatcttataaagttcattgcatattgtgagaacagaatgaggaatgtgatatttggatagggatttcagctgcagaccacagcctcttgtgagatgatctctttattcttgaataatggaagatcaaagtttttgtgctggcatcagtgaggtgtgttggaggatacagtgtgcaattagaccaagatcttatcaggagtattattgaggttttattttctgtctgcctgataagccaaacagtgataggctctgttacaggttgaagcaaatatatttgtaatctactgaaaagtagattacttctgtaattttctcccttcccagttaacaagccctaatctacatttttaccatcactaatatttggaactttttcatttctaagaaagcttagtacagcgagaaaatcactgtttctcatccaaagtagtattgtgtctatccgaatgaatacaagtgataatttcagctatagtggcgtcatgtctttgtagctttaggttggattggtgttttcttaagcagagttgttagtcatgaacccatccatgatttatcttaaagagataatatacacacagagaaaccataacagtactcagcagggctagctattaagatttcttgcacaagtatttagctttttgtaaggtcaacatgtaaattttaaaaacaaatatagagagacttatgtgtttgaaatataaatgatatatatggattcgcatgtacctgtatattattaaacatgcagtgaattgactgataagtgattgtctaattgtatggctagcaatgtaatttattcagactgtatttttgtacagagcagcacacactaacctatgcctctgtgtcctccttaatgcctaaaactgtgcctagaaatttcatctgtcttaaagaaaataaaatatactccatgctgttttatgattttagtttctctcctgctattctgtatttattattttaaaatatctgacatgtttactacttaaatatgagtttgttgtatcctggttccttttttccctcttagcagtcatctggggaaacctgtgtgtcactccagtgatgcttgagtgtgcagtcccatgatctgttcttcatttcatgatttttgtagttaacctaaagttatctatgtggaaaaaaaataaaaaaataaaagtggtttcactgataatgctctcattttgtgtcttttttgtgtaagctgattagagcaattttctaaattgcataacatcagttcattttctattttaaaatct

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