LOCUS       NM_001105884            1830 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus homeo box D1 (Hoxd1), mRNA.
ACCESSION   NM_001105884 XM_001064329 XM_221520
VERSION     NM_001105884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR and
            Ginty DD.
  TITLE     An evolving NGF-Hoxd1 signaling pathway mediates development of
            divergent neural circuits in vertebrates
  JOURNAL   Nat Neurosci 14 (1), 31-36 (2011)
   PUBMED   21151121
REFERENCE   2  (bases 1 to 1830)
  AUTHORS   Zakany J, Kmita M, Alarcon P, de la Pompa JL and Duboule D.
  TITLE     Localized and transient transcription of Hox genes suggests a link
            between patterning and the segmentation clock
  JOURNAL   Cell 106 (2), 207-217 (2001)
   PUBMED   11511348
  REMARK    Erratum:[Cell 2001 Sep 21;106(6):795]
REFERENCE   3  (bases 1 to 1830)
  AUTHORS   Wolf LV, Yeung JM, Doucette JR and Nazarali AJ.
  TITLE     Coordinated expression of Hoxa2, Hoxd1 and Pax6 in the developing
            diencephalon
  JOURNAL   Neuroreport 12 (2), 329-333 (2001)
   PUBMED   11209945
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_221520.4, XM_001064329.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132269 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q23"
     gene            1..1830
                     /gene="Hoxd1"
                     /note="homeo box D1"
                     /db_xref="GeneID:288151"
                     /db_xref="RGD:1309179"
     exon            1..756
                     /gene="Hoxd1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    60..62
                     /gene="Hoxd1"
                     /note="upstream in-frame stop codon"
     CDS             105..1091
                     /gene="Hoxd1"
                     /codon_start=1
                     /product="homeobox protein Hox-D1"
                     /protein_id="NP_001099354.1"
                     /db_xref="GeneID:288151"
                     /db_xref="RGD:1309179"
                     /translation="

MSSYLEYVSCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGALGRAADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEPGPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTSGLPAAHSTFEWMKVKRNAPKKSKLSEYGATSPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASLQLPGSETSPIKSGRNLGSPSQAQEPS"

     misc_feature    <726..1079
                     /gene="Hoxd1"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    801..962
                     /gene="Hoxd1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            757..1830
                     /gene="Hoxd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atatgaggccactatttacctcgggctcgctcgccatggctcggcgagggcagcgggggtagcggaccggcagggtgcggcgcctgggtctcgcggatcgagccatgagctcctacctggagtacgtatcgtgcgctgcgggcggaggcagcggaggggtaggcggcgacgtgctgggcttcgcacccaagttctgccgcgccgacgcgcgcccagtggccctgcagcccgccttccccctgggcagcggcgacggcgccttcgtgagctgcctgcccctggccgctgcccggcccacgccttcacctcccgtagcccccgcgcagcccccgggcccgcagccggccgcgtcccggtacgcgccctgtaccctggaaggcgcctacgaacggggcgccgcacctgcctctgccgccgagtatggtttcttggggtccgggccggcattcgactttccgggcgcgcttgggagagcagcggacgacagcggcccgcacgtccactatgccacctcggcggtcttttccagcggaggatcattcctgctcagcggccaggtggacttcgctgcctttgccgagcctggcccctttcccgcttgtctcaaggaacccgcagacggccaccccgggccctttcagactgtgtccccggcccccggagcctgccccaagcccgcctcgcccacctccggcctcccggccgcccacagcactttcgagtggatgaaagtgaagaggaacgcccccaagaaaagcaaactgtccgaatatggagccacaagcccctccagtgccatccgcacgaatttcagcaccaagcaactgacagaactcgagaaagagtttcatttcaataagtacctaactagagcccgacgcatggagatagccaactgtttacagctgaatgacacccaggtcaaaatctggttccagaaccggaggatgaaacagaagaaaagggaacgagaggggcttctggccacagctgcctctgtggcctcgcttcaacttcccgggtcagaaacaagtcccatcaaatctggccggaatctaggaagcccttctcaggctcaagagccttcctgaggcccactcttaaggctgaggacctttggattatacagaagtcacagactgcccccagccacctttgtatagacttaaaagcttagtctaggctggagacgggcgtgggtagaagttaatacggattttacttggcaaaggaattgtctatactggcttctgaggcccagaggctatgtatagagatatatatttgataccttttatttgcatattatttttgcctcatcaggggaaagctgtctagctaccagcctaaacgctgctatgttagtcatgaacaattcttgggtacggaatggcaggccttcttagtctgatgtggtcaaaacgtacctctctgaagtcatttcagttttaagttcctggacagactacatatattcagcttcctgaaatgaccaaagctagccagggttccctcaatggagctaagctgcttcaatgatgttcatattgtactccagttttatttaaagtcgttcctacctcttcttgtgcctgagtgaagatacacaatcgctctttagttggtaccggaataaatccattgggtagataaggattagaatctaattataccttgacatcagttactcaaacttgaagtataaatatatacagtatgtatattttttaaagatttgcttgcagtgaaccctatatatgacatttaatgtcatgcatagcatgtaaagattttgaccgtttttttggtaataaaagttacagaatctac

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