2024-04-28 01:46:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001077674 2141 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus H2.0-like homeobox (Hlx), mRNA. ACCESSION NM_001077674 XM_001064868 XM_344184 VERSION NM_001077674.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2141) AUTHORS Bates MD, Dunagan DT, Welch LC, Kaul A and Harvey RP. TITLE The Hlx homeobox transcription factor is required early in enteric nervous system development JOURNAL BMC Dev Biol 6, 33 (2006) PUBMED 16854219 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2141) AUTHORS Mikhalkevich N, Becknell B, Caligiuri MA, Bates MD, Harvey R and Zheng WP. TITLE Responsiveness of naive CD4 T cells to polarizing cytokine determines the ratio of Th1 and Th2 cell differentiation JOURNAL J Immunol 176 (3), 1553-1560 (2006) PUBMED 16424184 REFERENCE 3 (bases 1 to 2141) AUTHORS Quinn LM, Johnson BV, Nicholl J, Sutherland GR and Kalionis B. TITLE Isolation and identification of homeobox genes from the human placenta including a novel member of the Distal-less family, DLX4 JOURNAL Gene 187 (1), 55-61 (1997) PUBMED 9073066 REFERENCE 4 (bases 1 to 2141) AUTHORS Hentsch B, Lyons I, Li R, Hartley L, Lints TJ, Adams JM and Harvey RP. TITLE Hlx homeo box gene is essential for an inductive tissue interaction that drives expansion of embryonic liver and gut JOURNAL Genes Dev 10 (1), 70-79 (1996) PUBMED 8557196 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC127513.1. On or before Nov 15, 2006 this sequence version replaced XM_344184.3, XM_001064868.1. ##Evidence-Data-START## Transcript exon combination :: BC127513.1, SRR8487226.3157.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760494, SAMN16676789 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2141 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="13" /map="13q26" gene 1..2141 /gene="Hlx" /gene_synonym="Hlx1" /note="H2.0-like homeobox" /db_xref="GeneID:364069" /db_xref="RGD:1311961" exon 1..905 /gene="Hlx" /gene_synonym="Hlx1" /inference="alignment:Splign:2.1.0" misc_feature 26..28 /gene="Hlx" /gene_synonym="Hlx1" /note="upstream in-frame stop codon" CDS 323..1753 /gene="Hlx" /gene_synonym="Hlx1" /note="homeobox protein HLX1; H2.0-like homeo box 1" /codon_start=1 /product="H2.0-like homeobox protein" /protein_id="NP_001071142.1" /db_xref="GeneID:364069" /db_xref="RGD:1311961" /translation="
MFAAGLAPFYASNFSLWSAAYCSSAGPGGCSFALDPAAVKKPSFCIADILHAGVGEPGPAAEGLVGASAALTAHLGSVHPHASFQAAARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYHQHLPQQPPTQQQQPQQQPPPPPRAGSLQPPTSGTRVVPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPTGVHLAGLQPSAGQFFASLDPISEASAILSPLSSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGVPAEGEREERSPSRSEGEAESESSDSESLDMAPSDTERTEGTERSLHQTTVIKASAAGALITASSSASGSSFSFSSSSSLGSSNGSAGSASSLGSNCSELLPSHQPSVTSGPQSPEIAQVPLAGL"
misc_feature 683..832 /gene="Hlx" /gene_synonym="Hlx1" /note="propagated from UniProtKB/Swiss-Prot (A0JPN1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 992..>1345 /gene="Hlx" /gene_synonym="Hlx1" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(1130..1144,1160..1162,1211..1213,1229..1231, 1268..1270,1274..1279,1286..1291,1295..1303,1307..1312) /gene="Hlx" /gene_synonym="Hlx1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1136..1138,1157..1159,1277..1279,1286..1291, 1298..1300) /gene="Hlx" /gene_synonym="Hlx1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1148..1309 /gene="Hlx" /gene_synonym="Hlx1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 1304..1525 /gene="Hlx" /gene_synonym="Hlx1" /note="propagated from UniProtKB/Swiss-Prot (A0JPN1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1559..1750 /gene="Hlx" /gene_synonym="Hlx1" /note="propagated from UniProtKB/Swiss-Prot (A0JPN1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 906..1085 /gene="Hlx" /gene_synonym="Hlx1" /inference="alignment:Splign:2.1.0" exon 1086..1270 /gene="Hlx" /gene_synonym="Hlx1" /inference="alignment:Splign:2.1.0" exon 1271..2116 /gene="Hlx" /gene_synonym="Hlx1" /inference="alignment:Splign:2.1.0" ORIGIN
ccctgtctccccggcttctgcggagtagcagaacgaggccgcgtccgccgcctcgccccagcgccgggcgatcgcctccatccaccggacggagagcttgcccgccgcgccgcctttcaagccaagccaggggcccaggccgtggcgggcggcgatcgggccctcgccacgtccctcggtggcgctagggctcccgggctggccctccgcttcggggcgagcggagaagcgaaagcagctcgggctgggctgggacaccgcctctccccgagcacccacccacttccccactcacccaagaccccgccgggatcctgccaggatgttcgcagccggcctggctcccttctacgcttccaactttagtctctggtcagccgcctactgctcctccgcgggcccgggcggctgctccttcgccttggacccggccgctgtcaagaaaccctctttctgcatcgcggacatcctgcacgccggcgtcggggagccgggacccgctgcagagggactggtgggggcctcggcagccctcaccgcacacttgggctccgtgcacccgcacgcttccttccaagctgccgccagatccccgctccgtcccaccccggtggtggcgccctcagaagtcccggctggattccctcagcggctgtctccgctctctgccgcctaccaccagcatctcccgcagcaaccaccaacgcagcaacagcagccgcagcaacagcccccgcctccaccccgggcgggctccctgcagccgccgacttcggggacgcgggtggtcccccaccatagcggctccgcccctgccccctccagcaaagacctcaaatttggtattgaccgaattttgtctgcagaatttgacccaaaagtcaaggaaggcaacactctgagagatctcacatcgctgctaactggtgggcggcccacaggggtgcatctggctggcctgcagccttcggcgggacagttcttcgcatctctagatcccattagcgaggcgtctgccatcctcagccccttaagctccaacccaagaaattctgttcaacatcaattccaagacacgtttccaggtccctatgctgtgcttaccaaggacaccatgccacagacgtacaagcggaagcgctcctggtcccgtgctgtcttttccaacctgcaaagaaaaggcctggagaagaggtttgagatccagaagtacgtgaccaaaccagatcgaaagcagctggcggccatgctgggcctcacggatgcacaggtgaaggtgtggttccagaaccggaggatgaagtggcggcattctaaggaggcgcaggcgcaaaaggacaaggacaaggaagcgggcgaaaagccttcgggcggagtccccgccgagggagaaagagaagagaggagccccagccgttccgagggcgaagccgagagcgagagcagtgactcggagtccctggacatggcccccagcgacacagaacggactgagggaacagagaggtccctgcaccaaactacagtcatcaaggcctcagccgcgggtgccctcatcacagccagcagcagcgcgagtgggagcagcttcagcttcagcagctccagcagcctgggtagcagcaacggcagcgcggggagcgccagcagccttggcagcaactgctcggagctgcttccctcgcaccagccctcagtcaccagcggtcctcaaagccctgagattgcccaggttccgcttgcaggtttatagactggaccgagggcatggcgtgtagcttccccaacactggctggagattgtgcctactttaagttggtggcaagggtcgccgagatgggagccggacgccgtgggcagcctctttggggttcatgccttttctcttgctgccaaggctccctaaggcccacaacccccttccccacaaagagtggagagttttaaggtccctggccaaagaaagaattcgactgttctccctacccaagcagctcacactgtgaagtgttcggtggaactgttcctctgagcaccaggggtcttggcgtaaggacaagctgcacttaggaggcctttaacttgtaaataaaatgtttactacggtttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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