LOCUS       NM_001012094            5108 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus zinc finger and BTB domain containing 43
            (Zbtb43), mRNA.
ACCESSION   NM_001012094 XM_231153
VERSION     NM_001012094.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5108)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 5108)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087042.1.
            
            On Feb 11, 2005 this sequence version replaced XM_231153.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087042.1, CK480605.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN14984036 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5108
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..5108
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="zinc finger and BTB domain containing 43"
                     /db_xref="GeneID:311872"
                     /db_xref="RGD:1310287"
     exon            1..100
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /inference="alignment:Splign:2.1.0"
     exon            101..161
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    124..126
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="upstream in-frame stop codon"
     exon            162..250
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..1677
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="zinc finger protein 297B"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein
                     43"
                     /protein_id="NP_001012094.1"
                     /db_xref="GeneID:311872"
                     /db_xref="RGD:1310287"
                     /translation="

MPTNVYSSQIGHQGQSKVRFHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN"

     misc_feature    295..657
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 43 (ZBTB43); Region:
                     BTB_POZ_ZBTB43; cd18227"
                     /db_xref="CDD:349536"
     misc_feature    1399..1455
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1408..1410,1414..1416,1420..1422,1426..1431,
                     1438..1443,1450..1452,1492..1494,1498..1500,1510..1515,
                     1522..1527,1534..1536,1576..1578,1582..1584,1588..1590,
                     1594..1599,1606..1611)
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1477..1539
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1513..1584
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    1561..1614
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     exon            251..5082
                     /gene="Zbtb43"
                     /gene_synonym="Zfp297b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggcggaagttgtccccgcggtggcggcggagaataaggccttcgtacggcaacagggacgctccggtaggctggagctgggagcgcggagccgtctgaagactgctcttcgatggccatgacataaggaacattatcctgggaacacaactttgctctcggggagatgccaacaaacgtttattcatcccagatagggcaccaaggacagagcaaagtacgattccaccaaagtccaacttgtcgaaccacactaaacaagattggtgatgaaatggagcctggaacaaactcttttcaagtagagtttccagatttttccagcaccattctgcagaaactaaaccagcagcgccagcaaggacagttatgtgacgtctccattgttgtccaaggccacattttccaggcacacaaagccgttcttgctgccagttcaccctacttttgtgaccaagtactcctgaaaaacagtaggagaattgttttgcctgatgtgatgaacccaagagtgtttgagaacattcttttatttagttacacaggacgccttgtaatgcctgctccagaaattgttagttacttaacagcagccagcttcctccagatgtggcatgtggtggacaagtgcaccgaggttctggagggaaaccccacagtcttgtgtcagaagctaaaccatggcagtgaccaccagtcccccagcagcagtaactacaatggcctggccgagagctttgagctgggctctgggggccacactgatttccccaaagcccaggagctgagggatggcgaaaacgaagaggagagcaccaaagacgagctgtcatctcaggtcaccgagcacgagtatctgcccagtaactcgtccacggagcatgaccgcctgagcaccgagatggccagccaggacggggaggaggggaccaacgacagcacagagttccactacacccggcctctgtatagcaagcccagcatcatgcctcacaggcgctggatccatgtgaagcctgagcgcctggaacagccttgggatggcatggatgtgcacgcagcctacgatgagcaccaggtctccgagtccgtcaacaccatgcagacagatcactcggcccagccttcgggagcggaggaggagttccagattgtggagaagaaagtggaagtagagttcgacgagcatgcagagggcagtaactacgacgagcaggtggacttctacggctcctccatggaggagttctctggagaaaagttggggggcggtctaattggacacaaacaggagactgcccttgcagcaggctacagtgagaacattgagatggtgatggggataaaagaagaggcgtcccacttaggattctcagccaccgacaagctgtatccttgtcagtgtgggaaaagtttcacgcacaaaagtcagcgagatcgacacatgagcatgcacctcggtctgcgcccgtatggctgcagtgtctgtggtaagaaattcaaaatgaagcaccatctcgtgggccacatgaaaattcataccggcataaagccctacgagtgtaatatctgtgcaaagagatttatgtggagggacagtttccacaggcatgtgacttcttgtaccaagtcctatgaagctgcaaaggctgggcagaatacgactgaggctaactaaaaatagggtctggcccttgagtggcatgcacaaaaataaactatggtaattaatgcaaatctgggcacagatgatgcgtgccacttgctattatgagagaggcttaaaaaaaaaggaagatatttctgaaagaccagctctaagtaggccaattaaaagatttaatttctcaaatctgtatgttcccatcctggcctagaatggatgatggggataagttcacccagtgcccagctggcaagacagcccttccagccagcagtggttaaggcaggggactggatggcagactctcacaccagtcctgcccaggtggcagcggccggctgtcaccattgtcccgggtcttgttacatttgttctcctggtagcttcagggcttctgggctttgctttggtagctgcgtcactggatgctgctcccctcaaggctacagcgaggactcctgggctgagctacgagcagagctctgtttgttctattttcgtatgttctaaaggttctagttaaagccatggtgacattagacggggcttctgagtccgaatcaggagacagtgtcaccgtgctgcaggctctggagaaggcacagttttatgtttgtgtttggttaagtcttcaggtgccagagacagagctttctagttggtgtgttgtcctaagcttccctcagttaatggcaggagatgaccggtttgcagtgacacacgacagtgctggctagtagtggcctgtggctccctgccttagatcacggtgcttcccaacaaggccagccagggaccacagctcatgagactaagccagaatgtgtggctaagagttccctgtgagcaagacacttataacagaaggcttgagaaaagaatcttaaaaacactggcgtggggagtgctgttgtagagggtgggctaggcagtattgtcagctttgtgagagctggaacatggcttccaaggggatgggagcctacattaagcaacatcatctagagactctgttccccagtcacagagaaagccgcgtttacaagtcccaatagtttatacacacatgtgcaggcgcacacacacccacactcacacttcaccaccaccatctcctcactcccgcaaggacgaggctgcccttgaggtcttttctgcatggtcagacgtcttaggttggaaagaaagcttgtgttcagaaagcttttaagcgtgtgacagttctgaggctcttgctgggtaggggtctagtgctctttccatcactggaataatacactcggagcaaagcaacttagggaggaaagggtttgtattagctcacactaccatcatggaggaaaccacagcaggaacgggaatgttgacagtccagacagttggccagtcatgcccacaggccactccctcagtggagactcgcttcctctatgactctaggttgtgtcagagctagctaggcagtaggacagggttttactcctatatcatctgtttcgttcctaaagttcgactttctctaatatgacagacattactggcaaaagtgtctgatatttaggctctgaacaaaggatgtacctttgacctttgtctggaaagaggaaagaaaatgtggactggccagtaaacgtttgtaatcaagattacaaaacagggatctatttacaaacactgtatcaatcttggcatataaagcactttgtattaaaactttattataagtatagatgtaggtttttttttttaacctagaaactagatgttacctcctagtggtttgctacattaagatcttccagtgtctgccagtcagcgactgtccttgtccctgagaagtgagtgcagatggacagtcacactcacaggcacactcacgcctcctactcttcacacagaggccagcgggtttagggatgacccgctgtgtgagggcgaagtggttttggcttcttagtatttctacactggggcagttaagccgttttgttgtcagaagcagccctcttgttcacacctacctgcctcccatcggagtctattcgtacaagagctgagacccttgcagagaagaattagagggtaaaagaaccaccatggggacaccctggtcctggggttgtactgagtcaggatcctttgtcatggtgctgacaaagcttttgagttggaatgtggcaaaccctgtgagaaggtggggtgtcatggtctagaatgtgaagtgaggcttctggcctccctttcccaatagagagtctttctggccgcctgcctcctgcagtactagtctctcccctcaccactgccttagaaatcctcacccttccgaacaagctcgagtagttgtgggcagcactgtccagcgtttcagggattgtcagtggcccaccagcaaagcgcatgtctctacacttggctggttttctccagtcctcatacgaaagggcttcaaggccccgctgcttgcatttcctaatcggcaggcaccatggcttaacttcttggatgtacatcacaggagctccttttgtgttgtggtttgccctcgtgctcctctgagccctggcccatgacctcgaatttctgttctccccttctccgcccacattcttagagcccgcattaaaggctcccctacattgcaggaagtgtttcctgaactactctgacctgggcgggtttttagcagttgggaaagctgcgagctgcagtgggtggcaaagttgaggaatatttgggaaagtccctagggtcagggtggcactccacctcgtccacaaatgtggttgtttcctaaactctcagatacacggggaatgctgaggccagcgggccaggatctaggcctcctggaatctaggctgccttgactggtaactaactttatccagtgaatcctgagttgctttgggttttgttcttggtttttgttttttgttttgttttgttttgttttgtttctctctctctctctgctatttacatatttaaaggtactgttttgcaaacctctactgatagtgccctgtgggaagatgctggaacgccgtttgcaaatgtgattttgtttttctttttaaatgttgcttgaagcctgtgtcgtctcagttgctgctgcctcctttctttttatgaggttcccaatgtttcttccagaaagttattttatttatgcaggtcaggtgactcttaggccccagaaccatgggatggtaagcagattgttgttaggtgcgtatcatggatacttggtgaaccacctgtgttttagaagttaaatagttctctctagaattgctgtcttcagtgtacagcgtggttttaattgaatgttactgtttaatattttcttcttatagaagagaccatgtccttttgtatgacaagttttaataaatgttacctgtccattttgtaaaaaaaaaaaaaaaaaaaaaaaaaaa

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