LOCUS       XM_015788201            1355 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HOX18 (LOC107276211), mRNA.
ACCESSION   XM_015788201
VERSION     XM_015788201.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089040) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015788201.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
     gene            1..1355
                     /gene="LOC107276211"
                     /note="homeobox-leucine zipper protein HOX18; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 long SRA reads, 4 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     27 samples with support for all annotated introns"
                     /db_xref="GeneID:107276211"
     CDS             172..960
                     /gene="LOC107276211"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX18"
                     /protein_id="XP_015643687.1"
                     /db_xref="GeneID:107276211"
                     /translation="

MYSSSSMEGEDLGSWLGLGIGGGGYAYGGDDCRRSPSSPSPVQMLFSQHVKEEITRGYDHGRDEEQASGSKIMKGERGARLRVMRSIRNSGGDGSRSRVLSLGDDGGDGGSGGGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSSYSS"

     misc_feature    529..693
                     /gene="LOC107276211"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    697..>798
                     /gene="LOC107276211"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     polyA_site      1355
                     /gene="LOC107276211"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tcttctccatagctatcaaacacaccttgtaagcttctagcttcttcttcttcttctacatacacttcatcttctccatagcaaacaccttaaacttatagctgcttcttcttcttcttcttcttcttcttcttctacatagaatagaagcttctacataagatatagtccatgtatagctctagtagcatggaaggagaggatctaggttcatggcttggtctcgggatcggcggcggcggttacgcatacggcggcgacgattgccggaggtcaccgtcgtctccgtcgccggtgcagatgttgttctcccagcatgtcaaggaagagatcacgaggggatatgatcatggccgtgatgaagaacaagcttcagggagcaagatcatgaagggagagagaggtgcaaggctaagggtgatgaggtccatcaggaacagcggcggcgacggtagccgctcgcgtgtactgagcctcggcgacgacggcggcgatggcggcagcggcggcggcggcggtggcggcacgaggaagaagctccagctcaccaaggagcagtcgaccttgctcgaggacagcttccgcgtccacaacattctttctcatgctcagaagcacgagctcgctcgtcagctgaaactgaagccgagacaggtcgaagtgtggttccaaaatagaagagccaggacgaagctgaagcagactgaggtggactgcgagttcttgaagcgatgctgcgagagcctgaccgaggagaacaagcagctcaagcatgagctcatggagctgcgtcggctggcttcgccggcggcggcggcggccggctcgcagctctacgtccagttcccgagggcggcggcggcggcgatggtgaacgtctgcccgtcctgcgagaaggtcaccgtgatgggcggcggcggcggcgagacgggaaagagctcctccagctatagctcttaataatataaattaatttaactattagtttgtactcggagtttgaacaaacacctgatgaatatggaggtgtgatgatcgatcgacttcgtgtagatgatcaactagctaggtgtgccaatatatatataactcttagtaattgatttgacgcccttatgtaaggttttgcatgcggtgttgcagcatgcaacctagctaggcttttttatggacttgttgctgtgaaactcaacaagaaagcctcttgagaacaaactgcctgatcaccagcaccctcttgtgggccggactggacatgcaactgcctactggtactgattgggctgcacacattaaccatgcacacttattattttcatattcctgaatcctgagctgatttaagcttttactca

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