LOCUS       XM_015769714             915 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group large ribosomal subunit
            protein uL6-like (LOC4327999), mRNA.
ACCESSION   XM_015769714
VERSION     XM_015769714.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089036) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015769714.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
     gene            1..915
                     /gene="LOC4327999"
                     /note="large ribosomal subunit protein uL6-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 23 ESTs, 2708 long SRA reads, 26 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 180 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:4327999"
     misc_feature    1
                     /gene="LOC4327999"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             56..634
                     /gene="LOC4327999"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL6-like"
                     /protein_id="XP_015625200.1"
                     /db_xref="GeneID:4327999"
                     /translation="

MKTILASETMEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDQ"

     misc_feature    56..631
                     /gene="LOC4327999"
                     /note="60S ribosomal protein L6; Provisional; Region:
                     PTZ00027"
                     /db_xref="CDD:240234"
     polyA_site      915
                     /gene="LOC4327999"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gccgccgccggagagggagagagagagagagagagagagagagagagagcgagagatgaagacgatcttggcttcggagacgatggagatcccgtcgggggtgacggtgcacgtggcggcgaaggtggtgacggtggagggtccccgtgggaagctgacgcgcaacttcaagcacctgaacctggacttccagctgctggaggtggagggggtgaggaagctgcaggtggacgcgtggttcggcacccgccgcaccatggccgccatccgcaccgccatctcccacgtccagaacctcatcaccggcgtcaccaagggctaccgctacaagatgcgcttcgtctatgcccatttccccatcaacgcctccatcaccaactccaacaccgccatcgagatcaggaacttcctcggcgagaagaaggtgaggaaagtggacatgcttgagggtgtgacaattttgcgttctgagaaggtcaaggatgagctggtccttgatggcaatgatatcgagcttgtctcccgttctgcggcactgatcaaccagaaatgccacgtcaagaacaaggatatcaggaagttcctggatggcatctatgtcagtgacaagggcaccatcactgaggaccagtgagctgcgtttccttactagctgtagcaaaacctgtcctagagagagtgcacaaggaacttttactgctctgtttttgagtcaaattacaaggtcattcgacaatgaaattttgtactactgggttaggatgttattatgtaattggagcatgtgctcctatggtatccgtattgtttgtgagaatgtttctgtgcttatttctcttgatggatcttttttacaccgttgaaagaacctgcaacttgggttattattatctcgccctcgttggttctgctgca

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